Protein Alignment Rdl and Gabrq

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: XP_006229578.1
• Gene: Gabrq / 65187
• RGDID: 68331
• Length: 640
• Species: Rattus norvegicus
• Alignment Length: 640
• Identity: 180/640 - (28%)
• Similarity: 278/640 - (43%)
• Gaps: 163/640 - (25%)

  Fly    59 ISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRK 123
            :..|||....:||.|:|||:||.||.|.:::||.||..:||:.||:|:..:..|.|.|.||||
  Rat    59 VQKILDRVLSTYDVRLRPNFGGAPVPVSISIYVSSIEQISEINMDYTITMFLHQTWKDTRLAY-- 121

  Fly   124 RPGVET---LSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASC 185
               .||   |::.....:.:||||.:|||.|.::.|..|..|...::|..|::...||||.||:|
  Rat   122 ---YETNLNLTLDYRMHEKLWVPDCYFVNSKDAFVHDVTAENRVFQLHPDGTVQYGIRLTTTAAC 183

  Fly   186 PMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINLT 250
            .::||.||||:|.|.:|:||:|||:.||...|.|. :::.::.|:.:||:..||....:.|:...
  Rat   184 SLDLQKFPMDKQSCKLEVESYGYTVEDIVLSWEDD-NAIHITDELHIPQYTYLGRTITSKEVYFY 247

  Fly   251 TGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMS 315
            ||:|.||..:.|..|.:..||:|:|.|:.|..|:||:|||:|..::.|||.:|:|::|.:||:.|
  Rat   248 TGSYMRLIVKFQVQREVRSYLVQVYWPTVLTTILSWISFWMNYGSSAARVTIGLTSILVLTTIDS 312

  Fly   316 STNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYM----AKRIQMRKQRFMAIQKIAEQKK 376
            .....||.||.:|:||:|:..|...||.|||||..:.|:    |.|...|:.| ...:.:|..:.
  Rat   313 HMRDKLPHISCIKAIDIYILVCLFFVFLSLLEYVYINYLFFSQAPRRNHRRCR-KPRRVVARYRY 376

  Fly   377 QQLDGANQQQANPNPNANV---GGPGGVGVGPGGP------------------------------ 408
            |::..||.|....|....|   .||     .|..|
  Rat   377 QEVVVANVQDGLINVEDRVEDRAGP-----LPDSPMQAHLASQESLGSLMFTSEEAQLATSESLS 436

  Fly   409 --GGPGGGVNVGVGMGMG----------PEHG-HGHG-------------HHA------------ 435
              ......|.:..|..:|          |::. |.||             .|:
  Rat   437 LLSSASSQVQLATGESLGDLPSTSEQTLPDYTIHFHGFLTNDSILPIKIRSHSDALGDEDSEESL 501

  Fly   436 ---HSHGHPHAP----KQTVSNRPI--------GFSNIQQNVGTRG------------CSIVGPL 473
               .|:||..:|    |..:|.|.:        ...::|.::..:.            ...:..|
  Rat   502 SSEESYGHGGSPTGRLKLQISQRCVQEASWDIDKIESLQDDISIKSSWLGLDEQRKGDADSIWSL 566

  Fly   474 FQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPE 538
            ..|........|..|.....|          :|..|.||....               ||
  Rat   567 TDEELMACDQEKDSSSSSESE----------ESCSPSPGCSFN---------------EG----- 601

  Fly   539 AAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLH 593
              ....|.:|.:|.||              |::||.:||:.|..||::||:.:::
  Rat   602 --FSFQLFNPNRVPKV--------------DRWSRFLFPLSFGLFNVVYWLYHIY 640

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	71/185 (38%)
		Neur_chan_memb	274..588	CDD:397193	91/415 (22%)
Gabrq	XP_006229578.1	Neur_chan_LBD	60..264	CDD:280998	84/209 (40%)
		Neur_chan_memb	271..>373	CDD:280999	40/102 (39%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D226476at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.920