Protein Alignment Rdl and gabrr3a

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_001122232.1
• Gene: gabrr3a / 570876
• ZFINID: ZDB-GENE-080722-20
• Length: 472
• Species: Danio rerio
• Alignment Length: 533
• Identity: 151/533 - (28%)
• Similarity: 238/533 - (44%)
• Gaps: 148/533 - (27%)

  Fly    70 YDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGS 134
            :|..:||.:||..:.||:.:.|.||..:|||.||||:..|.|.:|.|.|||:..... ::.:..:
Zfish    76 HDFAMRPGFGGSAIPVGIDVQVESIDGISEVNMDFTMTLYLRHYWQDDRLAFPSSNN-KSRTFDA 139

  Fly   135 EFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLC 199
            ..:|.|||||.|||:.|:|:.|..|..|..:||...|:|..|:|:|:||.|.|:...||:|.|.|
Zfish   140 RLVKKIWVPDVFFVHSKRSFIHDTTMENIMLRVFPDGNILYSVRITVTALCSMDFSRFPLDTQNC 204

  Fly   200 HIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLG-HRQRATEINLTTGNYSRLACEIQF 263
            .:|:||:.|...|:..:|::|..|: .:.|:.|.||.:.. |.........:||.|:||......
Zfish   205 SLELESYAYNENDLMLYWKNGNDSL-RTDEIALSQFFIEEFHPSYGLAFYSSTGWYNRLYINFIL 268

  Fly   264 VRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVK 328
            .|.:.::::|.|.|:.|:|::||||||::|.|.||||:||:||||||:|:::..:|::|::||||
Zfish   269 RRHIFFFMLQTYFPTMLMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTIITGVSASMPQVSYVK 333

  Fly   329 SIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQR-------FMAIQKIAEQKKQQLDGANQQQ 386
            ::|:||...|:.||.|::|||.|.|.....:|:|.:       :.|.|.:|      .||.....
Zfish   334 AVDIYLWASFLFVFLSVIEYAAVNYFTTVEEMKKLQKGKLPASYDATQAMA------YDGCFHDD 392

  Fly   387 ANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNR 451
            .:.:|                                                .|..|....:.|
Zfish   393 IDASP------------------------------------------------FPELPTTPSTTR 409

  Fly   452 PIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGG 516
            .|                                                       |.......
Zfish   410 TI-------------------------------------------------------PARASSTE 419

  Fly   517 PPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSD---IDKYSRIVFPV 578
            ||           |.||               .::.:.:.:.|.:....|:   ||.||||:||:
Zfish   420 PP-----------PTEG---------------TRLWRKRSVGKNIRFIMSNSYMIDSYSRILFPL 458

  Fly   579 CFVCFNLMYWIIY 591
            .::.||::||.||
Zfish   459 AYLLFNIIYWCIY 471

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	67/183 (37%)
		Neur_chan_memb	274..588	CDD:397193	73/323 (23%)
gabrr3a	NP_001122232.1	LIC	67..471	CDD:273305	149/531 (28%)
		LGIC_ECD	88..272	CDD:355788	68/185 (37%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D226476at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	4	3.780