DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and gabrr2b

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_697486.2 Gene:gabrr2b / 569032 ZFINID:ZDB-GENE-041014-174 Length:464 Species:Danio rerio


Alignment Length:549 Identity:165/549 - (30%)
Similarity:254/549 - (46%) Gaps:137/549 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 MLGDVNISAILDSFSVS---YDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 114
            ||.:....|:.....:|   :|..:||.:.||.|.|||.:.|.|:.|:|||.||||:..|.|.:|
Zfish    44 MLDETKTHAVKSEHLLSVEDHDFTMRPAFAGPAVPVGVDVQVESLDSISEVDMDFTMTLYLRHYW 108

  Fly   115 TDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRL 179
            .|.||::..:.. ::::.....:|.|||||.|||:.|:|:.|..||.|..|||:..|.:..|:|:
Zfish   109 KDERLSFPSKHN-KSMTFDGRLVKKIWVPDVFFVHSKRSFIHDTTTENIMIRVYPDGHVLYSLRV 172

  Fly   180 TITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLG-HRQR 243
            |:|::|.|:...||:|.|.|.:|:||:.||..|:..:|:.|..|:....::.|.||.:.. |...
Zfish   173 TVTSACNMDFSRFPLDTQTCTLELESYAYTDEDLMLYWKSGDESLSTDDKISLSQFLIQKFHTTS 237

  Fly   244 ATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL 308
            ......:||.|:||.......|.:.::|:|.|.|:.|:|::||||||::|.|.||||:||:||||
Zfish   238 RLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVL 302

  Fly   309 TMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYM-----AKRIQMRKQRFMAI 368
            ||:|:::..||::|::||:|::|:||...||.||.|:||||.|.|:     ....::|::.....
Zfish   303 TMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVHDGTDRKLRQKTLPGT 367

  Fly   369 QKIAEQKKQQLDGANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGH 433
            ..|:..:...|   |:....|:.|                             |:.     |:..
Zfish   368 CDISSMRTMML---NEAYGRPDSN-----------------------------GLA-----GYTQ 395

  Fly   434 HAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVN 498
            ...|...| |.||.    ||..           |..:||   ||:            |..:.|:.
Zfish   396 TTVSSEEP-AEKQD----PIAV-----------CLSIGP---EVK------------GAKKRTLR 429

  Fly   499 GGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGI 563
            |.|....:|.                                                       
Zfish   430 GLRIIQNTHA------------------------------------------------------- 439

  Fly   564 TPSDIDKYSRIVFPVCFVCFNLMYWIIYL 592
                ||.|||::||..|:.|||:||.:||
Zfish   440 ----IDAYSRMIFPGAFIFFNLIYWSVYL 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 68/183 (37%)
Neur_chan_memb 274..588 CDD:397193 81/318 (25%)
gabrr2bXP_697486.2 LIC 55..463 CDD:273305 160/535 (30%)
Neur_chan_LBD 56..261 CDD:280998 75/205 (37%)
Neur_chan_memb 268..460 CDD:280999 81/318 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
32.770

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