DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and gabrr2b

DIOPT Version :10

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_068071705.2 Gene:gabrr2b / 569032 ZFINID:ZDB-GENE-041014-174 Length:466 Species:Danio rerio


Alignment Length:551 Identity:164/551 - (29%)
Similarity:253/551 - (45%) Gaps:139/551 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 MLGDVNISAILDSFSVS---YDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 114
            ||.:....|:.....:|   :|..:||.:.||.|.|||.:.|.|:.|:|||.||||:..|.|.:|
Zfish    44 MLDETKTHAVKSEHLLSVEDHDFTMRPAFAGPAVPVGVDVQVESLDSISEVDMDFTMTLYLRHYW 108

  Fly   115 TDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSI--TRSI 177
            .|.||::..:.. ::::.....:|.|||||.|||:.|:|:.|..||.|..|||:..|.:  :.|.
Zfish   109 KDERLSFPSKHN-KSMTFDGRLVKKIWVPDVFFVHSKRSFIHDTTTENIMIRVYPDGHVLYSLSF 172

  Fly   178 RLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLG-HR 241
            |:|:|::|.|:...||:|.|.|.:|:||:.||..|:..:|:.|..|:....::.|.||.:.. |.
Zfish   173 RVTVTSACNMDFSRFPLDTQTCTLELESYAYTDEDLMLYWKSGDESLSTDDKISLSQFLIQKFHT 237

  Fly   242 QRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTT 306
            ........:||.|:||.......|.:.::|:|.|.|:.|:|::||||||::|.|.||||:||:||
Zfish   238 TSRLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVSLGITT 302

  Fly   307 VLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYM-----AKRIQMRKQRFM 366
            ||||:|:::..||::|::||:|::|:||...||.||.|:||||.|.|:     ....::|::...
Zfish   303 VLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVHDGTDRKLRQKTLP 367

  Fly   367 AIQKIAEQKKQQLDGANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGH 431
            ....|:..:...|   |:....|..|                             |:.     |:
Zfish   368 GTCDISSMRTMML---NEAYGRPESN-----------------------------GLA-----GY 395

  Fly   432 GHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENT 496
            .....|...| |.||.    |:..           |..:||   ||:            |..:.|
Zfish   396 TQTTVSSEEP-AEKQD----PMAV-----------CLSIGP---EVK------------GAKKRT 429

  Fly   497 VNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLL 561
            :.|.|....:|.                                                     
Zfish   430 LRGLRIIQNTHA----------------------------------------------------- 441

  Fly   562 GITPSDIDKYSRIVFPVCFVCFNLMYWIIYL 592
                  ||.|||::||..|:.|||:||.:||
Zfish   442 ------IDAYSRMIFPGAFIFFNLIYWSVYL 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 68/185 (37%)
Cys-loop 185..199 CDD:349809 6/13 (46%)
Neur_chan_memb 274..588 CDD:460753 80/318 (25%)
gabrr2bXP_068071705.2 None

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