Protein Alignment Rdl and gabrr1

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_001020724.1
• Gene: gabrr1 / 568984
• ZFINID: ZDB-GENE-040724-212
• Length: 466
• Species: Danio rerio
• Alignment Length: 529
• Identity: 159/529 - (30%)
• Similarity: 248/529 - (46%)
• Gaps: 140/529 - (26%)

  Fly    70 YDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGS 134
            :|..:||.:|||.:.|||.:.:.|:.::|||.||||:..|.|.:|.|.||::..... ::::...
Zfish    69 HDFTMRPGFGGPAIPVGVDVQLESLDTISEVDMDFTMTLYLRHYWKDARLSFPSNTN-QSMTFDG 132

  Fly   135 EFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLC 199
            ..:|.|||||.|||:.|:|:.|..||.|..:|||..|.:..|:|:|:|:.|.|:|.:||:|.|.|
Zfish   133 RLVKKIWVPDIFFVHSKRSFIHDTTTENVMLRVHPDGKVLYSLRVTVTSMCNMDLSHFPLDTQTC 197

  Fly   200 HIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLG-HRQRATEINLTTGNYSRLACEIQF 263
            .:||||:.||..|:..:|:.|..|:....::.|.||.:.. |.........:||.|:||......
Zfish   198 SLEIESYAYTDDDLMLYWKRGNKSLQTDDKISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTL 262

  Fly   264 VRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVK 328
            .|.:.::|:|.|.|:.|:|::||||||::|.|.||||.||:||||||:|:::..||::|::||:|
Zfish   263 RRHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIK 327

  Fly   329 SIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANPNPNA 393
            ::|:||...||.||.|::|||.|.|:: .:|.||:|        .|..:||
Zfish   328 AVDIYLWVSFVFVFLSVIEYAAVNYLS-TLQERKER--------SQNSRQL-------------- 369

  Fly   394 NVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNI 458
                |...|:                                     .|..:..:|:   .:|.:
Zfish   370 ----PCTCGM-------------------------------------THPGQMMMSS---SYSEM 390

  Fly   459 -QQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGG-----TLENTVNGGRGGPQSHGPGPGQGGGP 517
             ....|..|.|.:....|| :|.||....:.:|.     |..:|:|
Zfish   391 DMMTTGNYGMSELSDTKQE-QFLVHLVMDNEQGAQRPAVTTSSTLN------------------- 435

  Fly   518 PGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVC 582
                                   :..|.                      ||||||::||..:..
Zfish   436 -----------------------IDTHA----------------------IDKYSRVIFPGAYTL 455

  Fly   583 FNLMYWIIY 591
            ||::||.||
Zfish   456 FNIIYWSIY 464

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	67/183 (37%)
		Neur_chan_memb	274..588	CDD:397193	79/319 (25%)
gabrr1	NP_001020724.1	LIC	44..464	CDD:273305	157/527 (30%)
		LGIC_ECD	81..266	CDD:355788	68/185 (37%)
		Cys-loop	183..197	CDD:349787	7/13 (54%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	3	2.770