DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdl and gabrg2

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_021324510.1 Gene:gabrg2 / 553402 ZFINID:ZDB-GENE-091118-65 Length:477 Species:Danio rerio


Alignment Length:602 Identity:169/602 - (28%)
Similarity:253/602 - (42%) Gaps:170/602 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PLLTIWLAINMALIAQETGHKRIHTVQAATGGGSMLG----------DVNISAILDSFSVSYDKR 73
            |.:|:.|.:...|||    |..:.:||..:....:..          :.:::.||:|....||.:
Zfish    20 PAVTLKLFLWAFLIA----HLPLSSVQLESDDDEVTNKTWVLTPKVYESDVTHILNSLLDGYDNK 80

  Fly    74 VRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIK 138
            :||:.|..|..:...|:|.||..::.:.|::|:|.:|.|.|.|.||.:...  ::.|.:.|..:.
Zfish    81 LRPDIGVKPTVIHTDMFVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFNST--MKVLRLNSNMVG 143

  Fly   139 NIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEI 203
            .||:|||||.|.|::..|..||.|..:|:.:.|.|..::||||.|.|.:.|..||||...|.:|.
Zfish   144 KIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRILYTLRLTIDAECQLKLNNFPMDEHSCPLEF 208

  Fly   204 ESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMG 268
            .|:||...:|.|.|:.....||......|.||..:|.|..:..:...:|:|..|.......|.||
Zfish   209 SSYGYPKEEIVYKWKRSSVEVGDIRSWRLYQFSFVGLRNTSEVVRTVSGDYVVLTVFFDLSRRMG 273

  Fly   269 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVY 333
            |:.||.|||..|||::||||||:|::|.|||.:||:|||||||||.:....:|||:|||.::|::
Zfish   274 YFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLF 338

  Fly   334 LGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANPNPNANVGGP 398
            :..||:.|||:|:||.|:.|.   :..||.     .|.:::||:            ||...:   
Zfish   339 VSVCFIFVFAALIEYGTLHYF---VSNRKP-----SKKSDKKKK------------NPLLRL--- 380

  Fly   399 GGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVG 463
                                                   .....||  ||..||...:.||.|..
Zfish   381 ---------------------------------------FSSKQAP--TVDIRPRSATAIQMNNA 404

  Fly   464 T----------------RGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPG 512
            |                :.|:.....|::.                       |.|...||    
Zfish   405 TQMQERDEEYGYECLDGKDCTSFFCCFEDC-----------------------RSGAWRHG---- 442

  Fly   513 QGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFP 577
                                            .||               |..:.||.|:||.||
Zfish   443 --------------------------------RLH---------------IRVAKIDSYARIFFP 460

  Fly   578 VCFVCFNLMYWIIYLHV 594
            ..|..||::||..||::
Zfish   461 TAFGLFNVVYWFSYLYL 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 60/182 (33%)
Neur_chan_memb 274..588 CDD:397193 81/329 (25%)
gabrg2XP_021324510.1 Neur_chan_LBD 69..474 CDD:332142 158/544 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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