DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdl and ort

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_524406.1 Gene:ort / 45910 FlyBaseID:FBgn0003011 Length:485 Species:Drosophila melanogaster


Alignment Length:551 Identity:148/551 - (26%)
Similarity:234/551 - (42%) Gaps:100/551 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 GSMLGDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWT 115
            |.....:.|:.||......|||...|...|.|..|...:.|:.:.|:.|..|.:..|.:|.|.|.
  Fly    21 GEFQQSLAITDILPEDIKRYDKMRPPKKEGQPTIVYFHVTVMGLDSIDENSMTYVADVFFAQTWK 85

  Fly   116 DPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLT 180
            |.||...:....|...:..:::||:|.||:||.|.|...|...|..|.::.::...:|...::||
  Fly    86 DHRLRLPENMTQEYRLLEVDWLKNMWRPDSFFKNAKSVTFQTMTIPNHYMWLYKDKTILYMVKLT 150

  Fly   181 ITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRAT 245
            :..||.||...:|.|.|.|.:::||..:|..|:.:.| |..:.:.:...:||||..::.:.....
  Fly   151 LKLSCIMNFAIYPHDTQECKLQMESLSHTTDDLIFQW-DPTTPLVVDENIELPQVALIRNETADC 214

  Fly   246 EINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTM 310
            ....:|||::.|.......|.:.||:...|||:.:|||:||||||:...|.||||.||||::||:
  Fly   215 TQVYSTGNFTCLEVVFTLKRRLVYYVFNTYIPTCMIVIMSWVSFWIKPEAAPARVTLGVTSLLTL 279

  Fly   311 TTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQK 375
            :|..:.:.::||.:||:|::|.::..|.|.||.:|:||..:..:.....:.|.  ||..      
  Fly   280 STQHAKSQSSLPPVSYLKAVDAFMSVCTVFVFMALMEYCLINIVLSDTPIPKP--MAYP------ 336

  Fly   376 KQQLDGANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGH 440
                         |.|   |.|.|....|.|.|  |||                         .:
  Fly   337 -------------PKP---VAGDGPKKEGEGAP--PGG-------------------------SN 358

  Fly   441 PHAPKQTVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGP- 504
            ..|.||..:..|:....|::         :..:|.|:          :|...:..|.......| 
  Fly   359 STASKQQATMLPLADEKIEK---------IEKIFDEM----------TKNRRIVTTTRRVVRPPL 404

  Fly   505 QSHGPG-PGQGG--------GPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKL 560
            .:.||. |.|..        .||          .||.....||..:|...|.|.:.:..:.|.  
  Fly   405 DADGPWIPRQESRIILTPTIAPP----------PPPPQPAAPEPELPKPKLTPAQERLKRAIY-- 457

  Fly   561 LGITPSDIDKYSRIVFPVCFVCFNLMYWIIY 591
                   ||:.||::||..|...|.:||.::
  Fly   458 -------IDRSSRVLFPALFASLNGIYWCVF 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 50/182 (27%)
Neur_chan_memb 274..588 CDD:397193 83/323 (26%)
ortNP_524406.1 LIC 31..481 CDD:273305 146/539 (27%)
Neur_chan_LBD 38..235 CDD:280998 56/197 (28%)
Neur_chan_memb 243..>334 CDD:280999 38/92 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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