Protein Alignment Rdl and nAChRbeta2

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_524483.1
• Gene: nAChRbeta2 / 42920
• FlyBaseID: FBgn0004118
• Length: 519
• Species: Drosophila melanogaster
• Alignment Length: 391
• Identity: 80/391 - (20%)
• Similarity: 159/391 - (40%)
• Gaps: 76/391 - (19%)

  Fly    20 LLTIWLAINMALIAQETGHKRIHTVQAATGGGSMLGDVNISAILDSFSVSYDKRVRPNYGGPPVE 84
            ||.::|.:.:|               .:|...|...:.:...:.|....:|::.:||.......
  Fly     6 LLCVFLLVPLA---------------NSTAPISFEANPDTKRLYDDLLSNYNRLIRPVVNNTET- 54

  Fly    85 VGVTMYV-LSISSLSEVKMD---FTLDFYFRQFWTDPRLAY--RKRPGVETLSVGSEFIKNIWVP 143
              :|::: |.:|.|.||.:.   .|.:.:.:|.|.|.:|.:  .:..|||.|.|.||   :||||
  Fly    55 --LTVWLGLKLSQLIEVNLKNQVMTTNLWVKQRWFDYKLRWDPEEYGGVEQLYVPSE---HIWVP 114

  Fly   144 DTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 208
            |....|.....:.:...:...::  ::|.:.........:||.||::|||.|.|:|.::..|:.|
  Fly   115 DIVLYNNWDGNYEVTLMTKATLK--YTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTY 177

  Fly   209 --TMRDIRYFWR---DGLSSVGMSSEVELPQFRVLGHRQRATEINLTTGN---------YSRLAC 259
              ...|:::..:   ..|..||    ::|.:| .|.......|:..|...         :|.:..
  Fly   178 NGAQVDLKHLDQIPGSNLVQVG----IDLTEF-YLSVEWDILEVPATKNEEYYPDTLEPFSDITF 237

  Fly   260 EIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKI 324
            ::...|...:|.:.:.:|...:..::.:.|:|..: :..:|.|.::.::::|.........:|..
  Fly   238 KLTMRRKTLFYTVNLIVPCVALTFLTVLVFYLPSD-SGEKVTLCISILVSLTVFFLLLAEIIPPT 301

  Fly   325 SY-VKSIDVYLGTCFVMVFASLLEYATV------------------------GYMAKRIQMRKQR 364
            |. |..:..||  .|.|:..||..:.||                        .:|.|.:.||:.:
  Fly   302 SLAVPLLGKYL--LFTMILVSLSVWTTVCVLNIHFRSPSTHNMSPLVRKLFLHFMPKLMMMRRTQ 364

  Fly   365 F 365
            :
  Fly   365 Y 365

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	47/202 (23%)
		Neur_chan_memb	274..588	CDD:397193	21/117 (18%)
nAChRbeta2	NP_524483.1	LIC	9..479	CDD:273305	78/388 (20%)
		LGIC_ECD_nAChR_proto_alpha-like	29..247	CDD:349832	52/230 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45447353
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR18945
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	2.030