DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and nAChRalpha1

DIOPT Version :10

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster


Alignment Length:336 Identity:80/336 - (23%)
Similarity:142/336 - (42%) Gaps:54/336 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 ATGGGSMLGDVNISAILDSFSVSYDKRVRP---NYGGPPVEVGVTMYVLSISSLSEVKMD---FT 105
            ||||   |.:.:...:.|....:|::.:||   |.....|::|     |.:|.|.:|.:.   .|
  Fly    16 ATGG---LANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMG-----LRLSQLIDVNLKNQIMT 72

  Fly   106 LDFYFRQFWTDPRLAYRKRP--GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVH 168
            .:.:..|.|.|.:|.:....  ||:||.|.||   :||:||....|.....:.:...:...:  |
  Fly    73 TNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSE---HIWLPDIVLYNNADGNYEVTIMTKAIL--H 132

  Fly   169 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYT--MRDIRYFWRDGLS---SVGMSS 228
            |:|.:.........:.|.::::|||.|.|.|.::..|:.|.  |.|:|:..:...|   .||:..
  Fly   133 HTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDL 197

  Fly   229 E-----VELPQFRVLGHRQRATEINLTTGNYSRLACEIQFV---------RSMGYYLIQIYIPSG 279
            :     ||....||...|....        ||  .||..::         |...:|.:.:.||..
  Fly   198 QDYYISVEWDIMRVPAVRNEKF--------YS--CCEEPYLDIVFNLTLRRKTLFYTVNLIIPCV 252

  Fly   280 LIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKSIDVYLGTCFVMVFA 343
            .|..:|.:.|:|..: :..:::|.::.:|::|.........:|..|. |..:..||  .|.|:..
  Fly   253 GISFLSVLVFYLPSD-SGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYL--LFTMMLV 314

  Fly   344 SLLEYATVGYM 354
            :|....|:..:
  Fly   315 TLSVVVTIAVL 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 50/206 (24%)
Cys-loop 185..199 CDD:349809 6/13 (46%)
Neur_chan_memb 274..588 CDD:460753 18/82 (22%)
nAChRalpha1NP_001262916.1 LGIC_ECD_nAChR_proto_alpha-like 24..242 CDD:349832 56/237 (24%)
LIC 27..530 CDD:455710 75/322 (23%)
Cys-loop 149..163 CDD:349832 6/13 (46%)

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