Protein Alignment Rdl and nAChRalpha1

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_001262916.1
• Gene: nAChRalpha1 / 42918
• FlyBaseID: FBgn0000036
• Length: 597
• Species: Drosophila melanogaster
• Alignment Length: 336
• Identity: 80/336 - (23%)
• Similarity: 142/336 - (42%)
• Gaps: 54/336 - (16%)

  Fly    47 ATGGGSMLGDVNISAILDSFSVSYDKRVRP---NYGGPPVEVGVTMYVLSISSLSEVKMD---FT 105
            ||||   |.:.:...:.|....:|::.:||   |.....|::|     |.:|.|.:|.:.   .|
  Fly    16 ATGG---LANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMG-----LRLSQLIDVNLKNQIMT 72

  Fly   106 LDFYFRQFWTDPRLAYRKRP--GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVH 168
            .:.:..|.|.|.:|.:....  ||:||.|.||   :||:||....|.....:.:...:...:  |
  Fly    73 TNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSE---HIWLPDIVLYNNADGNYEVTIMTKAIL--H 132

  Fly   169 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYT--MRDIRYFWRDGLS---SVGMSS 228
            |:|.:.........:.|.::::|||.|.|.|.::..|:.|.  |.|:|:..:...|   .||:..
  Fly   133 HTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDL 197

  Fly   229 E-----VELPQFRVLGHRQRATEINLTTGNYSRLACEIQFV---------RSMGYYLIQIYIPSG 279
            :     ||....||...|....        ||  .||..::         |...:|.:.:.||..
  Fly   198 QDYYISVEWDIMRVPAVRNEKF--------YS--CCEEPYLDIVFNLTLRRKTLFYTVNLIIPCV 252

  Fly   280 LIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKSIDVYLGTCFVMVFA 343
            .|..:|.:.|:|..: :..:::|.::.:|::|.........:|..|. |..:..||  .|.|:..
  Fly   253 GISFLSVLVFYLPSD-SGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYL--LFTMMLV 314

  Fly   344 SLLEYATVGYM 354
            :|....|:..:
  Fly   315 TLSVVVTIAVL 325

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	50/206 (24%)
		Neur_chan_memb	274..588	CDD:397193	18/82 (22%)
nAChRalpha1	NP_001262916.1	Neur_chan_LBD	25..240	CDD:280998	56/234 (24%)
		LIC	27..530	CDD:273305	75/322 (23%)
		Neur_chan_memb	247..530	CDD:280999	18/82 (22%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45447367
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR18945
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	2.030