DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdl and HisCl1

DIOPT Version :10

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster


Alignment Length:336 Identity:117/336 - (34%)
Similarity:186/336 - (55%) Gaps:10/336 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 IWLAINMALIAQETGHKR-IHTVQAATGGGSML----GDVNISAILDSFSVSYDKRVRPNYGGPP 82
            |.|||.:..:.|...|.. :|..:..|....::    ..:::..||...|.:|||...|...|.|
  Fly    15 IALAIYLHALEQSIQHCHCVHGYRNNTESAELVSHYESSLSLPDILPIPSKTYDKNRAPKLLGQP 79

  Fly    83 VEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFF 147
            ..|...:.|||:.|::|..|.:..|.:..|.|.||||...:....:...:..:::.:||.||.||
  Fly    80 TVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLRLPENMSEQYRILDVDWLHSIWRPDCFF 144

  Fly   148 VNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRD 212
            .|.|:..||..:..|.::.::|..::....:||:..||.|..:.:|.|.|:|.:.|||..:|:.|
  Fly   145 KNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTVED 209

  Fly   213 IRYFWR--DGLSSVGMSSEVELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIY 275
            :.:.|.  |.|.   :::|:||||..:..:......|..:|||::.||......|.:||:|...|
  Fly   210 LVFIWNMTDPLV---VNTEIELPQLDISNNYTTDCTIEYSTGNFTCLAIVFNLRRRLGYHLFHTY 271

  Fly   276 IPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVM 340
            |||.|||::||:|||:...|.||||.||||::||:.|..:.:..:||.:||||:|||::.:|.|.
  Fly   272 IPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVF 336

  Fly   341 VFASLLEYATV 351
            ||.||:|:|.|
  Fly   337 VFLSLMEFAVV 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 54/184 (29%)
Cys-loop 185..199 CDD:349809 5/13 (38%)
Neur_chan_memb 274..588 CDD:460753 42/78 (54%)
HisCl1NP_731632.1 LGIC_ECD_HisCl 78..262 CDD:349793 55/186 (30%)
Cys-loop 182..196 CDD:349793 5/13 (38%)
LGIC_TM_anion 265..>351 CDD:349851 44/83 (53%)
TM1 helix 265..288 CDD:349851 14/22 (64%)
TM2 helix 292..316 CDD:349851 11/23 (48%)
TM3 helix 324..350 CDD:349851 13/24 (54%)

Return to query results.
Submit another query.