DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and HisCl1

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_731632.1 Gene:HisCl1 / 41426 FlyBaseID:FBgn0037950 Length:426 Species:Drosophila melanogaster


Alignment Length:336 Identity:117/336 - (34%)
Similarity:186/336 - (55%) Gaps:10/336 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 IWLAINMALIAQETGHKR-IHTVQAATGGGSML----GDVNISAILDSFSVSYDKRVRPNYGGPP 82
            |.|||.:..:.|...|.. :|..:..|....::    ..:::..||...|.:|||...|...|.|
  Fly    15 IALAIYLHALEQSIQHCHCVHGYRNNTESAELVSHYESSLSLPDILPIPSKTYDKNRAPKLLGQP 79

  Fly    83 VEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFF 147
            ..|...:.|||:.|::|..|.:..|.:..|.|.||||...:....:...:..:::.:||.||.||
  Fly    80 TVVYFHVTVLSLDSINEESMTYVTDIFLAQSWRDPRLRLPENMSEQYRILDVDWLHSIWRPDCFF 144

  Fly   148 VNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRD 212
            .|.|:..||..:..|.::.::|..::....:||:..||.|..:.:|.|.|:|.:.|||..:|:.|
  Fly   145 KNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTVED 209

  Fly   213 IRYFWR--DGLSSVGMSSEVELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIY 275
            :.:.|.  |.|.   :::|:||||..:..:......|..:|||::.||......|.:||:|...|
  Fly   210 LVFIWNMTDPLV---VNTEIELPQLDISNNYTTDCTIEYSTGNFTCLAIVFNLRRRLGYHLFHTY 271

  Fly   276 IPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVM 340
            |||.|||::||:|||:...|.||||.||||::||:.|..:.:..:||.:||||:|||::.:|.|.
  Fly   272 IPSALIVVMSWISFWIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVF 336

  Fly   341 VFASLLEYATV 351
            ||.||:|:|.|
  Fly   337 VFLSLMEFAVV 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 54/184 (29%)
Neur_chan_memb 274..588 CDD:397193 42/78 (54%)
HisCl1NP_731632.1 Neur_chan_LBD 67..262 CDD:280998 60/197 (30%)
Neur_chan_memb 270..>350 CDD:280999 42/78 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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