Protein Alignment Rdl and Grd

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_524131.1
• Gene: Grd / 39984
• FlyBaseID: FBgn0001134
• Length: 686
• Species: Drosophila melanogaster
• Alignment Length: 691
• Identity: 186/691 - (26%)
• Similarity: 268/691 - (38%)
• Gaps: 208/691 - (30%)

  Fly     8 KLARMAPLPRTPLLTIWLAINMALIAQETGHKRIHTVQAATGGGSMLGDVNISAILDSFSVSYDK 72
            :|..|.....:.|.:.||       .|...|                  .|||.:||:....||.
  Fly    83 RLGEMGTSLSSSLPSSWL-------TQSNNH------------------ANISELLDNLLRGYDN 122

  Fly    73 RVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFI 137
            .:||::||||..:.|.:.|.|:..:|||.|.:::|.||||.|.|.|||:  ....:||::....:
  Fly   123 SIRPDFGGPPATIEVDIMVRSMGPISEVDMTYSMDCYFRQSWVDKRLAF--EGAQDTLALSVSML 185

  Fly   138 KNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIE 202
            ..||.|||:|.|.||||.|..||.|:|:|::.:|.:..|.||||.|.|||||..||||.|.|.::
  Fly   186 ARIWKPDTYFYNGKQSYLHTITTPNKFVRIYQNGRVLYSSRLTIKAGCPMNLADFPMDIQKCPLK 250

  Fly   203 IESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVL----------------------------- 238
            ..|||||..|:.|.|......|.::.:::|.||.::
  Fly   251 FGSFGYTTSDVIYRWNKERPPVAIAEDMKLSQFDLVDCPAGNLTDIVYKAAAPRPQRRPFNNKDP 315

  Fly   239 -----------------GHRQRATEINL-----------------TTG-------------NYSR 256
                             ....|.|.:.|                 |||             .||.
  Fly   316 PRPTSKVMTTFAGPAAKNQHVRGTGLKLDKGAFGTGRDATGGSGSTTGLSGTITLETNHPSEYSM 380

  Fly   257 LACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAAL 321
            |.......|.||.:|||:|.|..|:|::|||||||||.||..||:||:|||||||.|.......|
  Fly   381 LMVNFHLQRHMGNFLIQVYGPCCLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDL 445

  Fly   322 PKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKI----AEQKKQQLD-- 380
            ||:||..::|.::...|..:||::|::|.|.|..|  ....:.:..|:::    .|.:.:.|.
  Fly   446 PKVSYPTALDFFVFLSFGFIFATILQFAVVHYYTK--YGSGECYFIIEELDSESGESETEPLTSD 508

  Fly   381 --GANQQQ------------ANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGH 431
              |:.:.:            :.|.|...                          :||........
  Fly   509 FRGSTESKIYEVIPLSMCAISMPPPPTR--------------------------LGMLTSRNRRP 547

  Fly   432 GHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHS-KGGTLEN 495
            .:..|                          |.....::| || :.|.:...|:|.| :....|.
  Fly   548 RNRRH--------------------------GLWSMKLLG-LF-DWRRRRKPPRADSDEDEDDEQ 584

  Fly   496 TVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGG---------GDPEAAVPAHLLHPGKV 551
            |.......|.:      .................||.||         .:.||.        .|.
  Fly   585 TQLRANEAPTT------SAAAAAAQAAAQAARISPPTGGRRRMSYYRREEMEAR--------RKG 635

  Fly   552 KKVKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYL 592
            |:....|.:     |.||:.||||||:.|:..|:.||..||
  Fly   636 KRTPQYNSV-----SKIDRASRIVFPLLFILINVFYWYGYL 671

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	75/258 (29%)
		Neur_chan_memb	274..588	CDD:397193	81/343 (24%)
Grd	NP_524131.1	Neur_chan_LBD	110..326	CDD:280998	77/217 (35%)
		LIC	111..670	CDD:273305	174/635 (27%)
		Neur_chan_memb	398..667	CDD:280999	81/343 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45447365
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	4	3.840