Protein Alignment Rdl and pHCl-1

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_001261898.1
• Gene: pHCl-1 / 39730
• FlyBaseID: FBgn0264908
• Length: 978
• Species: Drosophila melanogaster
• Alignment Length: 654
• Identity: 149/654 - (22%)
• Similarity: 245/654 - (37%)
• Gaps: 161/654 - (24%)

  Fly    70 YDKRV-------------------------RPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFY 109
            ||||:                         ||:..| .:.|.|.:.:||::|..|..:.:.::|.
  Fly   350 YDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRG-TLTVNVNVLLLSLASPDESSLKYEVEFL 413

  Fly   110 FRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFV-----NEKQSYFHIATTSNEFIRVHH 169
            ..|.|.||||.|..:...:.|: ......:||.|||:|:     .:.....|.|      :|:..
  Fly   414 LNQQWNDPRLQYGNKSHYDFLN-ALHHHDSIWTPDTYFIMHGDFKDPIIPMHFA------LRIFR 471

  Fly   170 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQ 234
            :|:||.::|..:..||..:|..||.|...|...:||..|....|:|.|::...::..|..:....
  Fly   472 NGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQIKYVWKNDEDTLRKSPSLTTLN 536

  Fly   235 FRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPAR 299
            ..::.::..|.:.|...||||.|..|:.|.|...||...::||..::|..|:::|||..||.|||
  Fly   537 AYLIKNQTTACDQNSWRGNYSCLQVELTFTRDRAYYFTTVFIPGIILVTSSFITFWLEWNAVPAR 601

  Fly   300 VALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRK-- 362
            |.:||||:|...|..:...:.||.:|.:.:::|:.|.|...::|||||:..|.|:.::..:..
  Fly   602 VMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVV 666

  Fly   363 ---------QRFMAI-------------QKIAEQKKQQLDGAN-QQQANPNPNANVGGPGG---- 400
                     ||..|:             ...|......:.||. .....|..:::|..||.
  Fly   667 YRPGENPVTQRLPAVLSRIGVILASPLASAAATPAMSMMGGATPMSSGTPAASSSVATPGTPRIT 731

  Fly   401 -----VGVGPGGPGGPGGGVNVGV----------------GMGMGPEHGHGHGHHA-HSHGHPHA 443
                 .|.|.......||.:...|                ...:.|   |..|... |.:..|..
  Fly   732 DPEEFFGGGMRWQEAHGGIIGAAVQNLRARSIKRKAARSPSTSISP---HPSGRPTEHIYEEPGG 793

  Fly   444 PKQTVSNRPIGF---------------SNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKG-GT 492
            ....|::..:.|               :.::::|.|...::|..:..|:     ||:|..|. ..
  Fly   794 STSGVTSTKVKFKDELKEEQPEEAESSTKLRRSVATSTPALVVRIEAEI-----DPEAEDKPIQD 853

  Fly   493 LENTVN--------GGRGGPQSHGPG-------------PG---QGGGPPG---GGGGGGGGGGP 530
            :|.|..        ..|...:|:.|.             ||   |..|.|.   .....||...|
  Fly   854 MEMTERQLSLPLKPPRRKASRSNSPASVYSDAFENVEATPGEKRQNAGAPNEIVACTTCGGSNSP 918

  Fly   531 PEGGGDPEAAVPAHLL--------HPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMY 587
            .....:...|.....:        ||.:|.|.             ||..:||.||..:..|.:.:
  Fly   919 CTHSANNGCATETCFVQVRKKEPPHPIRVAKT-------------IDVIARITFPTAYAIFLIFF 970

  Fly   588 WIIY 591
            ::.|
  Fly   971 FVHY 974

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	51/187 (27%)
		Neur_chan_memb	274..588	CDD:397193	87/415 (21%)
pHCl-1	NP_001261898.1	Neur_chan_LBD	338..566	CDD:280998	57/223 (26%)
		Neur_chan_memb	578..>682	CDD:280999	35/103 (34%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	2.010