Protein Alignment Rdl and Glra4

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_001178843.1
• Gene: Glra4 / 367912
• RGDID: 1564103
• Length: 456
• Species: Rattus norvegicus
• Alignment Length: 595
• Identity: 179/595 - (30%)
• Similarity: 277/595 - (46%)
• Gaps: 159/595 - (26%)

  Fly    15 LPRTPLLTIW-----LAINMALIAQETGHKRIHTVQAATGGGSMLGDVNISAILDSFSVSYDKRV 74
            :|.:..|.:|     :.:::||..::        |::...|...:...:....|...:..||.|:
  Rat     5 VPASLFLLLWTLPGKVLLSVALAKED--------VKSGPKGSQPMSPSDFLDKLMGRTSGYDARI 61

  Fly    75 RPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKN 139
            |||:.||||.|...:::.|..|::|..||:.::.:.||.|.|||||||:.|. ::|.:....:.:
  Rat    62 RPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNVFLRQQWNDPRLAYREYPD-DSLDLDPSMLDS 125

  Fly   140 IWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIE 204
            ||.||.||.|||.:.||..||.|:.:|:..:|::..|||||:..||||:|:.||||.|.|.:::|
  Rat   126 IWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLE 190

  Fly   205 SFGYTMRDIRYFWRDGLSSVGMSSEVELPQF-----RVLGHRQRATEINLTTGNYSRLACEIQFV 264
            ||||||.|:.:.|.:...:|.::..:.||||     :.||:..:    :..||.::.:..:....
  Rat   191 SFGYTMNDLMFEWLEDAPAVQVAEGLTLPQFILRDEKDLGYCTK----HYNTGKFTCIEVKFHLE 251

  Fly   265 RSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKS 329
            |.|||||||:||||.||||:||||||:|.:|.||||.||:||||||||..|.:.|:|||:||||:
  Rat   252 RQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKA 316

  Fly   330 IDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANPNPNAN 394
            ||:::..|.:.|||:|||||.|.::::    :.:.||.:::...::..:.|...:
  Rat   317 IDIWMAVCLLFVFAALLEYAAVNFVSR----QHKEFMRLRRKQRRRHMEEDIIRE---------- 367

  Fly   395 VGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQ 459
                                       |.....|:|.||
  Rat   368 ---------------------------GRFYFRGYGLGH-------------------------- 379

  Fly   460 QNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGG 524
                   |           .:..|
  Rat   380 -------C-----------LQARD----------------------------------------- 385

  Fly   525 GGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWI 589
               |||.||........|..||..|:..:...:::     ...||..||.|||..|:.||:.||:
  Rat   386 ---GGPMEGSSIYSPQPPTTLLKEGETMRKVYVDR-----AKRIDTISRAVFPFTFLVFNIFYWV 442

  Fly   590 IY--LHVSDV 597
            :|  |...|:
  Rat   443 VYKVLRSEDI 452

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	69/187 (37%)
		Neur_chan_memb	274..588	CDD:397193	80/313 (26%)
Glra4	NP_001178843.1	LIC	9..444	CDD:273305	175/581 (30%)
		Neur_chan_LBD	47..254	CDD:280998	80/211 (38%)
		Neur_chan_memb	261..441	CDD:280999	80/313 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	1	1.000	-	-		H69070
Inparanoid	1	1.050	341	1.000	Inparanoid score	I2275
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X271
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	6	5.860