Protein Alignment Rdl and nAChRbeta3

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_525098.1
• Gene: nAChRbeta3 / 33228
• FlyBaseID: FBgn0031261
• Length: 441
• Species: Drosophila melanogaster
• Alignment Length: 417
• Identity: 84/417 - (20%)
• Similarity: 162/417 - (38%)
• Gaps: 70/417 - (16%)

  Fly    13 APL--PRTPLLTIWLAINMALIAQETGHKRIHTVQAATGGGSMLGDVNISAILD----SFSVSYD 71
            ||:  |..||| :.:.:.|.|:.       :.:|..||..... .:.|:.| ||    ....:||
  Fly     9 APVSGPGLPLL-LQMLMGMLLMG-------LTSVPGATATADP-KNANVKA-LDRLHAGLFTNYD 63

  Fly    72 KRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYR--KRPGVETLSVGS 134
            ..|:|.:.|.|..|.:.|.|..| .:.|:....|...:....|.|....::  :...:..:::.|
  Fly    64 SDVQPVFQGTPTNVSLEMVVTYI-DIDELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKS 127

  Fly   135 EFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLC 199
               ..:|.|.....|..:......|.    :.:.|.|..........||.|.:|:..:|.|:|.|
  Fly   128 ---SEVWTPQITLFNGDEGGLMAETQ----VTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSC 185

  Fly   200 HIEIESFGYTMRDIRYFWRDGLSSVGMSSE----VELPQFRVLGHRQRATEINLTTGNYSRLACE 260
            .::|.|:|     ::....:..::.|.|.:    |:.|::.::..|...    ::...|..:...
  Fly   186 KLKIGSWG-----LKVVLPENGTARGESLDHDDLVQSPEWEIVDSRAHF----VSQDYYGYMEYT 241

  Fly   261 IQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVAL-GVTTVLTMTTLM--------SS 316
            :...|....|...||.|:..|||::..:|||..:....::.: |:..::....||        .|
  Fly   242 LTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQLLPVLS 306

  Fly   317 TNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFM--------------- 366
            .|..|..|.|..|: :||....::  ..|:.|...|...:|:....::.:
  Fly   307 NNTPLVVIFYSTSL-LYLSVSTIV--EVLVLYLATGKHKRRLPEALRKLLHGHLGTWLLLSVFST 368

  Fly   367 ----AIQKIAEQKKQQLDGANQQQANP 389
                ..:|..|..:...:.|::|:::|
  Fly   369 TGESQAEKTKEMDEHPYEEADEQESSP 395

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	32/188 (17%)
		Neur_chan_memb	274..588	CDD:397193	29/144 (20%)
nAChRbeta3	NP_525098.1	LIC	39..437	CDD:273305	73/379 (19%)
		Neur_chan_LBD	52..247	CDD:280998	39/211 (18%)
		Neur_chan_memb	255..434	CDD:280999	29/144 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45447347
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	3	2.940