DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdl and Gabrr2

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_038965308.1 Gene:Gabrr2 / 29695 RGDID:61902 Length:491 Species:Rattus norvegicus


Alignment Length:581 Identity:164/581 - (28%)
Similarity:256/581 - (44%) Gaps:170/581 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 TGH-----------KRIHTVQAATGGGSMLGDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTM 89
            |||           |.:...:..||....|..|.          .:|..:||.:|||.:.|||.:
  Rat    55 TGHLETSKPSHLYKKNLDVTKIRTGKPRPLLRVE----------DHDFTMRPAFGGPAIPVGVDV 109

  Fly    90 YVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSY 154
            .|.|:.|:|||.||||:..|.|.:|.|.|||:..... .:::.....:|.|||||.|||:.|:|:
  Rat   110 QVESLDSISEVDMDFTMTLYLRHYWRDERLAFPSSSN-RSMTFDGRLVKKIWVPDVFFVHSKRSF 173

  Fly   155 FHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRD 219
            .|..||.|..:||...|.:..|:|:|:||.|.|:..:||:|.|.|.:|:||:.||..|:..:|::
  Rat   174 THDTTTDNIMLRVFPDGHVLYSMRITVTAMCNMDFSHFPLDSQTCSLELESYAYTDEDLMLYWKN 238

  Fly   220 GLSSVGMSSEVELPQFRVLG-HRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVI 283
            |..|:....::.|.||.:.. |.........:||.|:||.......|.:.::|:|.|.|:.|:|:
  Rat   239 GDESLKTDEKISLSQFLIQKFHTTSRLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLMVM 303

  Fly   284 ISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEY 348
            :||||||::..|.||||:||:.|||||:|:::..||::|::||::::|:||...||.||.|:|||
  Rat   304 LSWVSFWIDHRAVPARVSLGIMTVLTMSTIITGVNASMPRVSYIRAVDIYLWVSFVFVFLSVLEY 368

  Fly   349 ATVGYMAKRIQMRKQR-----FMAIQKIAEQKKQQLDGA-NQQQANPNPNANVGGPGGVGVGPGG 407
            |.|.|:. .:|.:|:|     |.....:...:...|||: ::.:||     ::.|          
  Rat   369 AAVNYLT-TVQEQKERKLRDKFPCTCGMLHSRTMTLDGSYSESEAN-----SLAG---------- 417

  Fly   408 PGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSIVGP 472
                                      :..||..|...:|.                         
  Rat   418 --------------------------YPRSHILPEEERQD------------------------- 431

  Fly   473 LFQEVRFKVH-----DPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPE 532
                 :..||     :..:..|.|.|:                 ||.|                 
  Rat   432 -----KIVVHLALNSELTSSRKKGLLK-----------------GQMG----------------- 457

  Fly   533 GGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSD--IDKYSRIVFPVCFVCFNLMYWIIY 591
                                        |.|..:.  ||||||::||..::.|||:||.::
  Rat   458 ----------------------------LYIFQNTHAIDKYSRLIFPAFYIVFNLIYWSVF 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 68/183 (37%)
Neur_chan_memb 274..588 CDD:397193 77/326 (24%)
Gabrr2XP_038965308.1 LIC 87..490 CDD:273305 157/547 (29%)
LGIC_ECD_GABAAR_rho 102..287 CDD:349806 69/185 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.770

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