DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdl and Gabra2

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_017454595.1 Gene:Gabra2 / 289606 RGDID:61856 Length:504 Species:Rattus norvegicus


Alignment Length:596 Identity:170/596 - (28%)
Similarity:248/596 - (41%) Gaps:164/596 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 RTPLLT--IWLAINMALI----------AQETGHKRIHTVQAATGGGSMLGDVNISAILDSFSVS 69
            ||.|.|  :|..:.:.|:          .||...|...|:              .:.|||.....
  Rat    55 RTKLSTCNVWFPLLVLLVWNPARLVLANIQEDEAKNNITI--------------FTRILDRLLDG 105

  Fly    70 YDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGS 134
            ||.|:||..|....||...:||.|...:|:..|::|:|.:|||.|.|.||.: |.| :..|.:.:
  Rat   106 YDNRLRPGLGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKF-KGP-MNILRLNN 168

  Fly   135 EFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLC 199
            .....||.|||||.|.|:|..|..|..|:.:|:...|::..::|||:.|.|||:|:.||||...|
  Rat   169 LMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLEDFPMDAHSC 233

  Fly   200 HIEIESFGYTMRDIRYFWRDGLS-SVGMSSE-VELPQFRVLGHRQRATEINLTTGNYSRLACEIQ 262
            .::..|:.||..::.|.|....| ||.::.: ..|.|:.:||.......|..:||.|:.:.....
  Rat   234 PLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEYTVMTAHFH 298

  Fly   263 FVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYV 327
            ..|.:||::||.|:|..:.||:|.|||||||.:.|||...|||||||||||..|...:|||::|.
  Rat   299 LKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYA 363

  Fly   328 KSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANPNPN 392
            .::|.::..|:..||::|:|:|||.|..|    |...:.....:.::||::.....|..|.....
  Rat   364 TAMDWFIAVCYAFVFSALIEFATVNYFTK----RGWAWDGKSVVNDKKKEKGSVMIQNNAYAVAV 424

  Fly   393 ANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSN 457
            ||                                               :||  .:|..|: .|.
  Rat   425 AN-----------------------------------------------YAP--NLSKDPV-LST 439

  Fly   458 IQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGG 522
            |.::..|                                                          
  Rat   440 ISKSATT---------------------------------------------------------- 446

  Fly   523 GGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMY 587
                    ||....||.       .|.:.||.  .|.:     |.||:.|||||||.|..|||:|
  Rat   447 --------PEPNKKPEN-------KPAEAKKT--FNSV-----SKIDRMSRIVFPVLFGTFNLVY 489

  Fly   588 WIIYLHVSDVV 598
            |..||:...|:
  Rat   490 WATYLNREPVL 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 63/184 (34%)
Neur_chan_memb 274..588 CDD:397193 78/313 (25%)
Gabra2XP_017454595.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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