DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdl and GABRP

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_055026.1 Gene:GABRP / 2568 HGNCID:4089 Length:440 Species:Homo sapiens


Alignment Length:534 Identity:142/534 - (26%)
Similarity:245/534 - (45%) Gaps:140/534 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 DSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVE 128
            ::.:..|:|.:|||:||.||::.:|:.:.||||:||..||:|...|.||.|.|.||.:.   |.:
Human    42 ENLTAGYNKFLRPNFGGEPVQIALTLDIASISSISESNMDYTATIYLRQRWMDQRLVFE---GNK 103

  Fly   129 TLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFP 193
            :.::.:..::.:|||||:.|..|:|:.|..|..|..||:..:|::..::|:|.|.:|.|:|..:|
Human   104 SFTLDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSNGTVLYALRITTTVACNMDLSKYP 168

  Fly   194 MDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINLTTGNYSRLA 258
            ||.|.|.:::||:||...|:.:.|..|..||.....:.|.|:.:..:....|.....||||:||.
Human   169 MDTQTCKLQLESWGYDGNDVEFTWLRGNDSVRGLEHLRLAQYTIERYFTLVTRSQQETGNYTRLV 233

  Fly   259 CEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPK 323
            .:.:..|::.|::::.|:||..:|::||||||::.::.|||..:||||||:|||||..:..:||.
Human   234 LQFELRRNVLYFILETYVPSTFLVVLSWVSFWISLDSVPARTCIGVTTVLSMTTLMIGSRTSLPN 298

  Fly   324 IS-YVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQA 387
            .: ::|:||||||.||..||.:|||||...|            .::|::|.:     |....::.
Human   299 TNCFIKAIDVYLGICFSFVFGALLEYAVAHY------------SSLQQMAAK-----DRGTTKEV 346

  Fly   388 NPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRP 452
            ......|:                   :|..:                           :...|.
Human   347 EEVSITNI-------------------INSSI---------------------------SSFKRK 365

  Fly   453 IGFSNIQ---QNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQG 514
            |.|::|:   .||.          :.::..|..|                               
Human   366 ISFASIEISSDNVD----------YSDLTMKTSD------------------------------- 389

  Fly   515 GGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVC 579
                                       ....:...|:.::.|...:.  .||::|.||:::||:.
Human   390 ---------------------------KFKFVFREKMGRIVDYFTIQ--NPSNVDHYSKLLFPLI 425

  Fly   580 FVCFNLMYWIIYLH 593
            |:..|:.||..|::
Human   426 FMLANVFYWAYYMY 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 62/182 (34%)
Neur_chan_memb 274..588 CDD:397193 67/317 (21%)
GABRPNP_055026.1 Neur_chan_LBD 43..437 CDD:332142 141/529 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4221
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.870

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