Protein Alignment Rdl and Glra1

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: XP_006246440.1
• Gene: Glra1 / 25674
• RGDID: 2704
• Length: 457
• Species: Rattus norvegicus
• Alignment Length: 600
• Identity: 185/600 - (30%)
• Similarity: 271/600 - (45%)
• Gaps: 182/600 - (30%)

  Fly     1 MSDSKMDKLARMAPLPRTPLLTIWLAINMALIAQETGHKRIHTVQAATGGGSMLGDVNISAILDS 65
            ::.||....||.||.|.:|                                        |..||.
  Rat    20 LAASKEADAARSAPKPMSP----------------------------------------SDFLDK 44

  Fly    66 F---SVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGV 127
            .   :..||.|:|||:.||||.|...:::.|..|::|..||:.::.:.||.|.||||||.:.|.
  Rat    45 LMGRTSGYDARIRPNFKGPPVNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYNEYPD- 108

  Fly   128 ETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYF 192
            ::|.:....:.:||.||.||.|||.::||..||.|:.:|:..:|::..|||:|:|.:|||:|:.|
  Rat   109 DSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLACPMDLKNF 173

  Fly   193 PMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQ-RATEINLTTGNYSR 256
            |||.|.|.:::|||||||.|:.:.|:: ..:|.::..:.||||.:...:. |....:..||.::.
  Rat   174 PMDVQTCIMQLESFGYTMNDLIFEWQE-QGAVQVADGLTLPQFILKEEKDLRYCTKHYNTGKFTC 237

  Fly   257 LACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAAL 321
            :.......|.|||||||:||||.||||:||:|||:|.:|.||||.||:||||||||..|.:.|:|
  Rat   238 IEARFHLERQMGYYLIQMYIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTTQSSGSRASL 302

  Fly   322 PKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQ 386
            ||:||||:||:::..|.:.||::|||||.|.:                 ::.|.|:.|....:::
  Rat   303 PKVSYVKAIDIWMAVCLLFVFSALLEYAAVNF-----------------VSRQHKELLRFRRKRR 350

  Fly   387 ANPNPNANV-----GGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQ 446
            .:.:|..|:     ||.|.....               ..||||
  Rat   351 HHKSPMLNLFQDDEGGEGRFNFS---------------AYGMGP--------------------- 379

  Fly   447 TVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGP 511
                     :.:|   ...|.|:                   ||....||.|
  Rat   380 ---------ACLQ---AKDGISV-------------------KGANNNNTTN------------- 400

  Fly   512 GQGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVF 576
                                          ||    |...|..:::.||.......|||.|||.|
  Rat   401 ------------------------------PA----PAPSKSPEEMRKLFIQRAKKIDKISRIGF 431

  Fly   577 PVCFVCFNLMYWIIY 591
            |:.|:.||:.|||||
  Rat   432 PMAFLIFNMFYWIIY 446

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	66/183 (36%)
		Neur_chan_memb	274..588	CDD:397193	86/318 (27%)
Glra1	XP_006246440.1	LIC	7..446	CDD:273305	183/598 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	341	1.000	Inparanoid score	I2275
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X271
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	4.860