DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdl and GABRB2

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001358656.1 Gene:GABRB2 / 2561 HGNCID:4082 Length:512 Species:Homo sapiens


Alignment Length:590 Identity:190/590 - (32%)
Similarity:286/590 - (48%) Gaps:139/590 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 AATGGGSMLGDVNISAI---LDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLD 107
            ||....|:....|:|.:   :|.....||.|:||::|||||.||:.:.:.||..:|||.||:||.
Human    20 AAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLT 84

  Fly   108 FYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGS 172
            .||:|.|.|.||:|...|  ..|::.:.....:|||||:|:|:|:|:.|..|..|..||:|..|:
Human    85 MYFQQAWRDKRLSYNVIP--LNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGT 147

  Fly   173 ITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRV 237
            :...:|:|.||:|.|:|:.:|:|.|.|.:||||:|||..||.::||...::|...:::|||||.:
Human   148 VLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSI 212

  Fly   238 LGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVAL 302
            :.::....::..:||:|.||:...:..|::||:::|.|:||.||.|:||||||:|.:|:.|||||
Human   213 VDYKLITKKVVFSTGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVAL 277

  Fly   303 GVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMA 367
            |:||||||||:.:.....||||.|||:||:||..|||.||.:|||||.|.|              
Human   278 GITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNY-------------- 328

  Fly   368 IQKIAEQKKQQLDGANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHG 432
                                                               :..|.||:......
Human   329 ---------------------------------------------------IFFGRGPQRQKKAA 342

  Fly   433 HHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSI---VGPLFQEVR-----FKVH--DPKAH 487
            ..|.|..:   .|..:....|.:.:|:|| ||:..|:   .|.|....|     |.::  ||..:
Human   343 EKAASANN---EKMRLDVNKIFYKDIKQN-GTQYRSLWDPTGNLSPTRRTTNYDFSLYTMDPHEN 403

  Fly   488 SKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDP--------------- 537
            ....|||  :.......::                        ..|.|||               
Human   404 ILLSTLE--IKNEMATSEA------------------------VMGLGDPRSTMLAYDASSIQYR 442

  Fly   538 EAAVPAHLL-------HPGKVK-KVKDINKLLGITPSD------IDKYSRIVFPVCFVCFNLMYW 588
            :|.:|.|..       |..:.| :::.....|.||..|      ||::|||.|||.|..||::||
Human   443 KAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYW 507

  Fly   589 IIYLH 593
            :.|::
Human   508 LYYVN 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 71/182 (39%)
Neur_chan_memb 274..588 CDD:397193 97/352 (28%)
GABRB2NP_001358656.1 LIC 9..510 CDD:273305 189/586 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101786
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.820

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