DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdl and GABRA2

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001317619.1 Gene:GABRA2 / 2555 HGNCID:4076 Length:511 Species:Homo sapiens


Alignment Length:583 Identity:163/583 - (27%)
Similarity:242/583 - (41%) Gaps:166/583 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 ILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPG 126
            |||.....||.|:||..|....||...:||.|...:|:..|::|:|.:|||.|.|.||.: |.| 
Human    45 ILDRLLDGYDNRLRPGLGDSITEVFTNIYVTSFGPVSDTDMEYTIDVFFRQKWKDERLKF-KGP- 107

  Fly   127 VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQY 191
            :..|.:.:.....||.|||||.|.|:|..|..|..|:.:|:...|::..::|||:.|.|||:|:.
Human   108 MNILRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVQAECPMHLED 172

  Fly   192 FPMDRQLCHIEIESFGYTMRDIRYFWRDGLS-SVGMSSE-VELPQFRVLGHRQRATEINLTTGNY 254
            ||||...|.::..|:.||..::.|.|....| ||.::.: ..|.|:.:||.......|..:||.|
Human   173 FPMDAHSCPLKFGSYAYTTSEVTYIWTYNASDSVQVAPDGSRLNQYDLLGQSIGKETIKSSTGEY 237

  Fly   255 SRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNA 319
            :.:.......|.:||::||.|:|..:.||:|.|||||||.:.|||...|||||||||||..|...
Human   238 TVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARN 302

  Fly   320 ALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKR--------------------------- 357
            :|||::|..::|.::..|:..||::|:|:|||.|..||                           
Human   303 SLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGWAWDGKSVVNDKSPSIKAEGITLTYN 367

  Fly   358 -----IQMRK---QRFMAI-------QKIAEQKKQQLDGANQQQANPNPNANVGGPGGVGVGPGG 407
                 :|..|   .:::|.       :|..|..::.:|....:|::....|:|            
Human   368 SVKAILQGAKLIWSKYIAFSWPSLFQEKTLEYLEKWMDCLTFKQSSKKEKASV------------ 420

  Fly   408 PGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNR--PIGFSNIQQNVGTRGCSIV 470
                                                   .:.|.  .:..:|...|:..      
Human   421 ---------------------------------------MIQNNAYAVAVANYAPNLSK------ 440

  Fly   471 GPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGG 535
            .|:...:          ||..|                                     .||...
Human   441 DPVLSTI----------SKSAT-------------------------------------TPEPNK 458

  Fly   536 DPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVV 598
            .||.       .|.:.||.  .|.:     |.||:.|||||||.|..|||:||..||:...|:
Human   459 KPEN-------KPAEAKKT--FNSV-----SKIDRMSRIVFPVLFGTFNLVYWATYLNREPVL 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 63/184 (34%)
Neur_chan_memb 274..588 CDD:397193 81/357 (23%)
GABRA2NP_001317619.1 LIC 25..500 CDD:273305 160/574 (28%)
LGIC_ECD_GABAAR_A2 47..249 CDD:349836 70/203 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
22.010

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