DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and GABRR3

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001099050.1 Gene:GABRR3 / 200959 HGNCID:17969 Length:467 Species:Homo sapiens


Alignment Length:526 Identity:151/526 - (28%)
Similarity:242/526 - (46%) Gaps:133/526 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 DKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSE 135
            |..:||.:||.||.||:.::|.||.|:||..||||:.||.|.:|.|.||::..... ::::....
Human    71 DFAMRPGFGGSPVPVGIDVHVESIDSISETNMDFTMTFYLRHYWKDERLSFPSTAN-KSMTFDHR 134

  Fly   136 FIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCH 200
            ..:.|||||.|||:.|:|:.|..|..|..:|||..|::..|:|:|::|.|.|:...||:|.|.|.
Human   135 LTRKIWVPDIFFVHSKRSFIHDTTMENIMLRVHPDGNVLLSLRITVSAMCFMDFSRFPLDTQNCS 199

  Fly   201 IEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINL----TTGNYSRLACEI 261
            :|:||:.|...|:..:|:.|..|:.....:.|.||.:   ...:....|    :||.|:||....
Human   200 LELESYAYNEDDLMLYWKHGNKSLNTEEHMSLSQFFI---EDFSASSGLAFYSSTGWYNRLFINF 261

  Fly   262 QFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY 326
            ...|.:.::::|.|.|:.|:|::||||||::|.|.||||:||:||||||:|::::.:|::|::||
Human   262 VLRRHVFFFVLQTYFPAILMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTIITAVSASMPQVSY 326

  Fly   327 VKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANPNP 391
            :|::||||....:.||.|::|||.|.|:. .::.||| |....||:..                 
Human   327 LKAVDVYLWVSSLFVFLSVIEYAAVNYLT-TVEERKQ-FKKTGKISRM----------------- 372

  Fly   392 NANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFS 456
                                   .|:.....|..:            |..|..:..:....:   
Human   373 -----------------------YNIDAVQAMAFD------------GCYHDSEIDMDQTSL--- 399

  Fly   457 NIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGG 521
            ::......|..||..|.....|.|    :..|.||                              
Human   400 SLNSEDFMRRKSICSPSTDSSRIK----RRKSLGG------------------------------ 430

  Fly   522 GGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVCFNLM 586
                                     |.|::  :.:.|.:       ||.||||:||:.::.|||.
Human   431 -------------------------HVGRI--ILENNHV-------IDTYSRILFPIVYILFNLF 461

  Fly   587 YWIIYL 592
            ||.:|:
Human   462 YWGVYV 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 65/186 (35%)
Neur_chan_memb 274..588 CDD:397193 75/313 (24%)
GABRR3NP_001099050.1 LIC 55..466 CDD:273305 150/523 (29%)
Neur_chan_LBD 59..267 CDD:280998 72/199 (36%)
Neur_chan_memb 274..463 CDD:280999 75/313 (24%)
Interaction with SQSTM1. /evidence=ECO:0000250 347..448 30/225 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.820

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