Sequence 1: | NP_001261617.1 | Gene: | Rdl / 39054 | FlyBaseID: | FBgn0004244 | Length: | 608 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_620252.1 | Gene: | Gabrr3 / 192258 | RGDID: | 621564 | Length: | 464 | Species: | Rattus norvegicus |
Alignment Length: | 536 | Identity: | 152/536 - (28%) |
---|---|---|---|
Similarity: | 236/536 - (44%) | Gaps: | 151/536 - (28%) |
- Green bases have known domain annotations that are detailed below.
Fly 70 YDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGS 134
Fly 135 EFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLC 199
Fly 200 HIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINL----TTGNYSRLACE 260
Fly 261 IQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS 325
Fly 326 YVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANPN 390
Fly 391 PNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGF 455
Fly 456 SNIQQNVGTRGCSIVGPLFQEVRFKVHDPKA---------HSKGGTLENTVNGGRGGPQSHGPGP 511
Fly 512 GQGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVF 576
Fly 577 PVCFVCFNLMYWIIYL 592 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Rdl | NP_001261617.1 | LGIC_ECD_GABAR_RDL-like | 83..266 | CDD:349809 | 67/186 (36%) |
Neur_chan_memb | 274..588 | CDD:397193 | 73/322 (23%) | ||
Gabrr3 | NP_620252.1 | LIC | 58..463 | CDD:273305 | 150/533 (28%) |
LGIC_ECD | 79..264 | CDD:355788 | 69/188 (37%) | ||
Cys-loop | 181..195 | CDD:349787 | 6/13 (46%) | ||
Interaction with SQSTM1. /evidence=ECO:0000269|PubMed:12431995 | 344..445 | 26/234 (11%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3644 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D226476at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
5 | 4.780 |