DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and lgc-57

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_496306.2 Gene:lgc-57 / 191636 WormBaseID:WBGene00001586 Length:473 Species:Caenorhabditis elegans


Alignment Length:566 Identity:136/566 - (24%)
Similarity:232/566 - (40%) Gaps:136/566 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 DVNISAILDSFSVSYDKRVRPNYGG------PPVE------VGVTMYVLSISSLSEVKMDFTLDF 108
            |.|::.|.:.|.:....|:....|.      |.::      |.:.||:..:||.....|||.:|.
 Worm    27 DENVTQIEEDFKIDDVTRILKRVGNYNRNAYPLLDQDLATHVDIQMYIEGMSSFHAQSMDFQVDI 91

  Fly   109 YFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSI 173
            ||::.|.|.||.:.....:  |....:....:|.||.:|.|.:.:.||..|..|..:.::.:|::
 Worm    92 YFQEKWVDHRLQHNNTKRI--LVKDPKLFGLLWHPDLYFANARTASFHDVTQPNFLVWIYPNGTV 154

  Fly   174 TRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVL 238
            ....|:::|..|..:|..:|:|.|.|.:.|.|:.|....:...|..| :.|.::..:.:|...:.
 Worm   155 WYDCRISLTVLCMQDLARYPLDSQNCGLRILSYAYDEEQLIIRWNGG-NPVEVNRGIRMPDMHLK 218

  Fly   239 GHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALG 303
            ..:.........||.:|....|....|.:.:::||.|||:.|||||||.||||:..|.|.||:|.
 Worm   219 HIKFYTKRDKYATGIWSSAVAEFHVDREITHHIIQSYIPTSLIVIISWFSFWLDVEAVPGRVSLS 283

  Fly   304 VTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMR---KQRF 365
            :||:||:.|..|:...|||:.|.||:|||::|||...||::::|:..|.|..:| ::|   |.|.
 Worm   284 ITTLLTLATQSSAARMALPQASDVKAIDVWMGTCMAFVFSAMIEFTVVNYCVRR-KVRTKIKPRG 347

  Fly   366 MA--IQKIAEQKKQQLDGANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHG 428
            ::  :..:..|.:::.|..|                            .|...:...|.:.|...
 Worm   348 LSEQVHDMVAQYREKKDKFN----------------------------NGNCEISYEMALQPNED 384

  Fly   429 HGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTL 493
            :                          :.:|:|...:.   |..:.|...|........||..|:
 Worm   385 N--------------------------ATVQRNFEKKE---VREMNQASLFVRRSLLPTSKRKTI 420

  Fly   494 ENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDIN 558
            |:.:|                                                      :|::..
 Worm   421 EDRIN------------------------------------------------------RVEENR 431

  Fly   559 KLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVVADDLVL 604
            |    ....||:|||.:||:.|:.||:.|||.||..:...:.:|:|
 Worm   432 K----NAQKIDRYSRALFPLAFIIFNIFYWIYYLKYAGSNSPELLL 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 45/188 (24%)
Neur_chan_memb 274..588 CDD:397193 74/318 (23%)
lgc-57NP_496306.2 Neur_chan_LBD 43..217 CDD:280998 44/176 (25%)
LIC 44..460 CDD:273305 128/534 (24%)
Neur_chan_memb 255..457 CDD:280999 74/317 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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