Protein Alignment Rdl and lgc-52

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_502839.3
• Gene: lgc-52 / 190669
• WormBaseID: WBGene00013517
• Length: 423
• Species: Caenorhabditis elegans
• Alignment Length: 563
• Identity: 126/563 - (22%)
• Similarity: 206/563 - (36%)
• Gaps: 170/563 - (30%)

  Fly    40 RIHTVQAATGGGSMLGDVNISAILDSFSVSYDKRVRPNYG------GPPVEVGVTMYVLSISSLS 98
            |||.|...........|:.:|::..:.:....:.:..||.      ..||:|.|.:.:..||.:|
 Worm    18 RIHDVTYQHIEDFTCDDIGLSSLSGAKATDLARILMTNYSRNALPEPAPVKVEVEITIQDISDIS 82

  Fly    99 EVKMDFTLDFYFRQFWTDPRLAY-RKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSN 162
            .:...||:|::....|.|.|||: ...|..:.||:..:....:|.|:...||.|.:..|.:...|
 Worm    83 AITGTFTIDYWISAIWNDKRLAFSHLDPCRKNLSLDHDMEPKLWSPNVCIVNSKSTKVHDSPKPN 147

  Fly   163 EFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMS 227
            ..:.:..:|:|..:.|:...|.|.|||:.||:|...|.:..||:.|...|:...|.:......:.
 Worm   148 ILLMIFPNGTIWLNYRIRSEAPCQMNLRNFPLDSIRCSLVFESYSYNAADVELQWLEWSPVSTVR 212

  Fly   228 SEVELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLN 292
            ::..||.||:......:.....|.|.:.||:..|.|.|..|:|::|:|:|:.:.|.|||::||::
 Worm   213 NDYNLPDFRMTNITYGSVTEAYTAGMWHRLSVSIHFERLYGFYILQMYLPTYISVFISWIAFWMD 277

  Fly   293 RNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKR 357
            ..|.|||:.|.|::::.:|....:...:|||.||||:||:::.:|...:|.||:|.|.|.|..|
 Worm   278 TKALPARITLSVSSLMALTFQFGNIVKSLPKASYVKAIDIWMFSCVGFIFFSLIELAIVAYNDK- 341

  Fly   358 IQMRKQRFMAIQKIAEQKKQQLDGANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMG 422
              |..||...::                       .:||.....|:|
 Worm   342 --MHDQRLREVR-----------------------CSVGNLNSNGIG------------------ 363

  Fly   423 MGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAH 487
                                                |.|..||            |..|......
 Worm   364 ------------------------------------QYNSTTR------------RSFVELSARR 380

  Fly   488 SKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVK 552
            :||..|
 Worm   381 AKGSEL----------------------------------------------------------- 386

  Fly   553 KVKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVS 595
                        .:.||:.:.::||..|..|||:||..||..|
 Worm   387 ------------GASIDRVASMLFPTMFALFNLVYWAYYLTTS 417

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	51/183 (28%)
		Neur_chan_memb	274..588	CDD:397193	57/313 (18%)
lgc-52	NP_502839.3	Neur_chan_LBD	45..248	CDD:280998	53/202 (26%)
		LIC	52..413	CDD:273305	117/523 (22%)
		Neur_chan_memb	259..>338	CDD:280999	31/78 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.910