DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and lgc-35

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001022438.1 Gene:lgc-35 / 189960 WormBaseID:WBGene00012915 Length:515 Species:Caenorhabditis elegans


Alignment Length:554 Identity:146/554 - (26%)
Similarity:233/554 - (42%) Gaps:152/554 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 SVSYDKRVRPN--YGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYR--KRPGV 127
            |:.||.|..|:  |.| ||.|.|::.|.:|.|:|||.||::::.::|:.|.||||.|.  |....
 Worm    81 SIKYDHRQVPDDGYDG-PVHVNVSIVVSNIRSVSEVTMDYSIEMFYRESWRDPRLTYSRDKFKNK 144

  Fly   128 ETLSVGSEFIKNIWVPDTFFVN-------EKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASC 185
            ..:|:...:...:|.||||..|       .:||..|     ...:|:.::|||..|.||::..:|
 Worm   145 TEISLHESYSNYLWHPDTFVPNAISSKNPRRQSITH-----RSLLRLRNNGSILYSRRLSLILTC 204

  Fly   186 PMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINLT 250
            .|:|..||.|.|||.:..||:|||...::|.|..|........::.||.|:|......:...:..
 Worm   205 GMDLTLFPFDTQLCKMGFESYGYTADKVKYLWSTGAIQSLKLHKIRLPDFQVKEAYVTSRVESYA 269

  Fly   251 TGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMS 315
            ||:||||.....|.|:.|:..:|:.|||..:||.||||.|: .|.|..:..:.:  :||:|.|:.
 Worm   270 TGDYSRLYVCFVFNRAAGFCFLQLIIPSTAVVITSWVSLWM-ENETSFQDMISI--ILTITFLLF 331

  Fly   316 STNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLD 380
            |.|..:|::||:|::|||||.||.:||.||::.|.|.||.:|:.:.:...:.             
 Worm   332 SYNEVMPRVSYIKAMDVYLGVCFCIVFLSLIKLAAVKYMRQRLLITRDTSIV------------- 383

  Fly   381 GANQQQANPNPNANVGGPGGVGVGP-----GGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGH 440
                               ..|:.|     .|.|.|  .||               |....::.:
 Worm   384 -------------------AAGMLPMLRLVNGIGSP--AVN---------------GSEGFTYEN 412

  Fly   441 PHAPKQTVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQ 505
            |...|  ||..|..|:.:|..  |.|.  :.|:.::.|.|                .||      
 Worm   413 PAVKK--VSMSPDTFTQVQME--TNGS--MSPVCRQNRAK----------------DNG------ 449

  Fly   506 SHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDK 570
                                                           .|...:.....:|:.:.:
 Worm   450 -----------------------------------------------NVSQSSNCFEFSPTFMHR 467

  Fly   571 Y---SRIVFPVCFVCFNLMYWIIYLHVSDVVADD 601
            :   :::.|...||.|.|.|:::|.::...:.||
 Worm   468 FHWITQMTFFFGFVIFCLFYFLVYPNIHTQITDD 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 64/191 (34%)
Neur_chan_memb 274..588 CDD:397193 67/321 (21%)
lgc-35NP_001022438.1 LIC 83..491 CDD:273305 142/540 (26%)
Neur_chan_LBD 84..283 CDD:280998 70/204 (34%)
Neur_chan_memb 293..>370 CDD:280999 35/79 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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