DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and lgc-45

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001335538.1 Gene:lgc-45 / 189345 WormBaseID:WBGene00021146 Length:1046 Species:Caenorhabditis elegans


Alignment Length:362 Identity:99/362 - (27%)
Similarity:175/362 - (48%) Gaps:17/362 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 INMALIAQE-TGHKRIHTVQAATGGGSM-LGDVNISAILDSFSVSYDKRVRP-NYGGPPVEVGVT 88
            :|:..:|.: .....:..:.:.|.|.:. ||...|..:|:  ...||....| .:.|..|.|...
 Worm   644 VNLTSLADKLRNDTEVDEILSRTNGSTKNLGGSFILPVLN--KNQYDPFSAPIVFQGSAVVVRFG 706

  Fly    89 MYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSE-FIKNIWVPDTFFVNEKQ 152
            :|:.|:|:.....||:.:|.|....|.|.||.   .|..:.:.|..| .::.||.||.||.|.|:
 Worm   707 IYIESMSNFQTSTMDYDMDIYLMMSWRDARLV---NPYDKPILVKEEDILEKIWRPDPFFANAKE 768

  Fly   153 SYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFW 217
            :.||..|..|..:|:...|.:....|:.|..||.:.|..:|.|:|.|.:.|:||.|.:..:|:.|
 Worm   769 AEFHEVTFLNFLMRIFPDGLVLYETRVKIKPSCNLILCKYPHDKQTCDLLIKSFAYPVETVRFEW 833

  Fly   218 ----RDGLSSVGMSSEVELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPS 278
                :|   ::..:.:|:||:..:..:..........:|.:|.|....:..|.:|:::.|.|||:
 Worm   834 FTRRKD---AIDKNPDVKLPELYIDRYETTTCPNERKSGAFSCLRAVFRLKRDVGFHIAQTYIPT 895

  Fly   279 GLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFA 343
            .|.::.|||..||.......|:.:.:|.:||::|..:.....||.:||:|:||::.|.....||.
 Worm   896 SLALMFSWVGVWLPEEFMEGRIGVAITVLLTLSTESAGAREHLPSVSYLKAIDLWFGFITGFVFF 960

  Fly   344 SLLE-YATVGYMAKRIQMRKQRFMAIQKIAEQKKQQL 379
            :||: ...:|:..:..|::|........|.|:.::.|
 Worm   961 TLLQTLFVIGFDKRANQLKKWAGRKTADITEEIREAL 997

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 52/187 (28%)
Neur_chan_memb 274..588 CDD:397193 32/107 (30%)
lgc-45NP_001335538.1 Neur_chan_LBD 687..>969 CDD:332142 85/287 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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