DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdl and lgc-40

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_508428.2 Gene:lgc-40 / 188854 WormBaseID:WBGene00020767 Length:494 Species:Caenorhabditis elegans


Alignment Length:558 Identity:139/558 - (24%)
Similarity:234/558 - (41%) Gaps:125/558 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 AILDSF--SVSYDKRVRP-NYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYR 122
            |.||..  ...|::...| .|.|.|..|.::|::..:||.|...||:.||.||::.|.|.|||:.
 Worm    33 AFLDKLKNETLYNRFATPTQYDGVPTNVTLSMFIEGMSSFSAQTMDYHLDVYFQEEWYDHRLAHN 97

  Fly   123 KRPG--VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASC 185
            ....  |..|:|    .|.:|.||.:|.|.:.:.|...|..|..:.|:.:|.:....|::|.:||
 Worm    98 ASAPILVRDLTV----FKMMWHPDVYFANARSAAFQDITDDNFLVWVYPNGRVWYDARISIVSSC 158

  Fly   186 PMNLQYFPMDRQLCHIEIESFGYTMRDIRYFW--RDGLSSVGMSSEVELPQFRVLGHRQRATEIN 248
            .|:|..:|:|.|.|.:.|.|:.|.|..:|..|  ::.:.::..:.::.:|...:...|.......
 Worm   159 NMDLWKYPLDSQECALRILSYAYPMTVLRLLWSEKEDVPAIDRNPDITMPDMSLKHIRTGYCNGT 223

  Fly   249 LTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTL 313
            ..||.:|.:.......|.|.::::|.|:|:.|||:|||.:|||..::.||||:|.:||:||::|.
 Worm   224 YATGEWSCMTAIFYVEREMMHHVMQTYVPTALIVVISWFNFWLEIDSAPARVSLSITTLLTISTQ 288

  Fly   314 MSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRK---QRFMAIQKIAEQ- 374
            .::...|||::||:|:|||::|:|...||..::|: |:.:.||.::|.:   |..:.:...... 
 Worm   289 ANAVKLALPEVSYMKAIDVWMGSCMAFVFGVMIEF-TICHYAKNLEMLRGDGQPSLIVDTALSTL 352

  Fly   375 --KKQQLDGANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHS 437
              ..:.:|...::.|..|....|                               .|.|..|.|.:
 Worm   353 FGAARDIDDLVRKVATLNEEEGV-------------------------------RGDGEQHIALN 386

  Fly   438 HGHPHAP--KQTVSNRPIGFSNIQQNVGT------RGCSIVGPLFQEVRFKVH-----DPKAHSK 489
            ..:|..|  :....|..:..:..:..||.      |..:.:..|.|:|....|     ..:|.:.
 Worm   387 MLNPEEPRLRSLNQNNDVTANGTRYFVGAERMKRKRSKASLSRLRQQVASMRHATIDVSRRAFNW 451

  Fly   490 GGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKV 554
            ...|.| :.|.|                                                     
 Worm   452 TRALRN-LRGRR----------------------------------------------------- 462

  Fly   555 KDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYL 592
                     ....||:..|||||:.|:.||:.||..||
 Worm   463 ---------VAQRIDERCRIVFPMIFLLFNVAYWSFYL 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 51/186 (27%)
Neur_chan_memb 274..588 CDD:397193 73/332 (22%)
lgc-40NP_508428.2 LIC 9..490 CDD:273305 137/555 (25%)
Neur_chan_LBD 44..242 CDD:280998 57/201 (28%)
Neur_chan_memb 249..487 CDD:280999 73/332 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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