Protein Alignment Rdl and lgc-53

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_741945.3
• Gene: lgc-53 / 188702
• WormBaseID: WBGene00020657
• Length: 497
• Species: Caenorhabditis elegans
• Alignment Length: 534
• Identity: 130/534 - (24%)
• Similarity: 219/534 - (41%)
• Gaps: 137/534 - (25%)

  Fly    66 FSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRP-GVET 129
            |..||||...|:...  .||.|.:.|.||:.:||....|..|.:|.|.|.||||.:..|. .::.
 Worm    93 FDDSYDKNNLPSANS--TEVIVELTVQSITEISEFSSSFKADVWFSQIWRDPRLDFSDRNYCLKN 155

  Fly   130 LSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPM 194
            :|:.|..:..:|.|:..|||.|:...|.:.:.|..:.:..:|::..:.|:::|..|.::|.||||
 Worm   156 ISLASHKLPTMWSPNVCFVNSKKVEIHASPSQNILLLIFPNGTVWLNFRVSLTGPCKLDLTYFPM 220

  Fly   195 DRQLCHIEIESFGYTMRDIRYFWRD-GLSSVGMSSEVELPQFRVLGHRQRATEINLTTGNYSRLA 258
            |||.|::..||:.|...::|..||| ...::.......||.|.::........:..|.|.:.:|.
 Worm   221 DRQSCNLVFESYSYNTAEVRIVWRDWDAVTIPDPDSKNLPDFELVNIEHMNATLVYTAGLWDQLE 285

  Fly   259 CEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPK 323
            .:..|.|..|||::|.|:|:.|.|.|||::||::..|.|||:.|||::::.:|....:....||:
 Worm   286 VKFTFRRLYGYYVLQAYMPTYLSVFISWIAFWIDTKALPARITLGVSSLMALTFQFGNIVKNLPR 350

  Fly   324 ISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQAN 388
            :||||::|:::..|...:|.||:|.|.||: |.:::.:::|.   .:..||...:.|...|..:.
 Worm   351 VSYVKALDIWMFGCVGFIFLSLVELAVVGF-ADKLEAKRRRH---NRCKEQLMMRSDSEQQWLSR 411

  Fly   389 PNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPI 453
            .:                               |..|:....:....|:
 Worm   412 LS-------------------------------GQRPQVSETNSDATHT---------------- 429

  Fly   454 GFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENT--VNGGRGGPQSHGPGPGQGGG 516
                ||.|.|.          ..||.:..:.|.......:|:.  |||.:
 Worm   430 ----IQINDGN----------GNVRRRKSEEKRQKLLLQMESPMFVNGEK--------------- 465

  Fly   517 PPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFV 581
                                                               ||:.|..:||:.|.
 Worm   466 ---------------------------------------------------IDEISAKLFPLLFT 479

  Fly   582 CFNLMYWIIYLHVS 595
            .||:.||..|:.:|
 Worm   480 AFNIFYWFYYIGMS 493

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	55/184 (30%)
		Neur_chan_memb	274..588	CDD:397193	60/315 (19%)
lgc-53	NP_741945.3	LIC	87..489	CDD:273305	128/528 (24%)
		Neur_chan_LBD	88..294	CDD:280998	62/202 (31%)
		Neur_chan_memb	302..486	CDD:280999	60/314 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	3.010