Protein Alignment Rdl and lgc-54

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_001343648.1
• Gene: lgc-54 / 188525
• WormBaseID: WBGene00020528
• Length: 493
• Species: Caenorhabditis elegans
• Alignment Length: 535
• Identity: 131/535 - (24%)
• Similarity: 227/535 - (42%)
• Gaps: 125/535 - (23%)

  Fly    66 FSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPG-VET 129
            |..:|:|...|......| |.|...:.:|:.:||:...||||..|.|.|.||||.:..... ::.
 Worm    60 FDDNYNKNTVPLKTSATV-VSVEFGIQNIAQVSEISASFTLDLLFSQIWHDPRLRFDHLTNCLQN 123

  Fly   130 LSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPM 194
            |::|...::.:|.|:..|||.|::..|.:.|.|.|:.::.:|::..:.||.:.:.|.::|..|||
 Worm   124 LTLGYSMVEKLWTPNVCFVNSKKTEIHSSPTPNIFLMIYPNGTVWVNYRLQVQSPCMVDLVLFPM 188

  Fly   195 DRQLCHIEIESFGYTMRDIRYFWRD--GLSSVGMSSEVELPQFRVLGHRQRATEINLTTGNYSRL 257
            |...|.:.|||:.|....::..||:  .:.|:..|   :|..|.:.|.:..........|.:.:|
 Worm   189 DIMNCELIIESYAYNAAKVKLNWREWQPVFSIAKS---KLSDFTLYGLQWTKNSFEYAAGQWDQL 250

  Fly   258 ACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALP 322
            ...:.|.|:.|:|::|:|||:...|.:|:||||::..|.|||:.|||::::.:|....:....||
 Worm   251 TVSLTFSRAYGFYILQMYIPTYSSVFLSFVSFWIDLKALPARITLGVSSLMALTFQYGNVAKNLP 315

  Fly   323 KISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQA 387
            ::.||||||||:......:|.:::|.|.|.|:.....:|::     ::.||:||:::  |..|:.
 Worm   316 RVGYVKSIDVYMVLTTAFIFLTMIEVAFVCYLDSENNLRRK-----ERQAEKKKERV--AVLQRK 373

  Fly   388 NPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRP 452
            ......|.|.                                                .||:|..
 Worm   374 KDRKKNNYGA------------------------------------------------TTVTNAN 390

  Fly   453 IGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGP 517
            ...|:::.|                    :| :..|:.||..:.::..|
 Worm   391 AAESDLRSN--------------------YD-EPFSQNGTTSHKISISR---------------- 418

  Fly   518 PGGGGGGGGGGGPPEGGGDPEAAVPAHLLHP----GKVKKVKDINKLLGITPSDIDKYSRIVFPV 578
                                :|......||.    |.:....|.|...  |..::||:.|..||:
 Worm   419 --------------------QANNMFESLHALAQFGLLTDDDDENTKW--TAQNVDKFCRKAFPL 461

  Fly   579 CFVCFNLMYWIIYLH 593
            .|...||:||..||:
 Worm   462 SFCFLNLIYWCYYLY 476

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	53/185 (29%)
		Neur_chan_memb	274..588	CDD:397193	66/317 (21%)
lgc-54	NP_001343648.1	Neur_chan_LBD	55..474	CDD:332142	129/531 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.910