DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and exp-1

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_495229.3 Gene:exp-1 / 186801 WormBaseID:WBGene00001373 Length:539 Species:Caenorhabditis elegans


Alignment Length:398 Identity:117/398 - (29%)
Similarity:194/398 - (48%) Gaps:54/398 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 VSYDKRVRP-NYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKR--PGVET 129
            :.||.|..| |..|....|.|::.|.:|.::|||.||:.|:.::|:.|.||||.|.::  .....
 Worm   109 IQYDHRQVPENEKGEATYVEVSVVVSNIRAVSEVTMDYALELFYRESWRDPRLQYDRKLFKNKTE 173

  Fly   130 LSVGSEFIKNIWVPDTFFVN-------EKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPM 187
            |::...:...:|.||||..|       ::.|..|     ...:|:..:|.:..|.|:::...|.|
 Worm   174 LALHESYTNFLWFPDTFVPNAIASKNPQRNSISH-----RSLLRLDETGKLLYSRRISLVCECTM 233

  Fly   188 NLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINLTTG 252
            :|..||.|:|||.:.|||:|||...:.|.|..|..:.....::.||.|.:......:...:..||
 Worm   234 DLTLFPFDKQLCKLGIESYGYTADHVVYKWSKGARTALELKKIRLPDFTIQEAYVTSQMESYATG 298

  Fly   253 NYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSST 317
            |||||.....|.||.|:..:|:.|||..:||.||||.|:.   |.......::.:|.:|.|:.|.
 Worm   299 NYSRLYVCFVFSRSSGFCFLQLIIPSTAVVITSWVSLWME---TETEFQDMISIILAITFLIFSY 360

  Fly   318 NAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGA 382
            |..:|::||:|::|:|||.||::||.||::.|.|.||.::|.:......:::::::...:|    
 Worm   361 NEMMPRVSYIKAMDIYLGVCFMIVFLSLIKLALVKYMRQKIMLTSDSGNSLREMSQMSTRQ---- 421

  Fly   383 NQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEH-------------GHGHGHH 434
             :.:|....|.|....|            ||.:.:      ..||             .:|....
 Worm   422 -RLRARKTSNMNFRNNG------------GGSIPI------NEEHQQMLTVPNGEDKMANGDDKE 467

  Fly   435 AHSHGHPH 442
            |:::|..|
 Worm   468 ANNNGKSH 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 59/191 (31%)
Neur_chan_memb 274..588 CDD:397193 48/182 (26%)
exp-1NP_495229.3 LIC 103..515 CDD:273305 117/398 (29%)
Neur_chan_LBD 111..311 CDD:280998 65/204 (32%)
Neur_chan_memb 320..>397 CDD:280999 32/79 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.870

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