Protein Alignment Rdl and acc-3

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_508810.2
• Gene: acc-3 / 186307
• WormBaseID: WBGene00018880
• Length: 517
• Species: Caenorhabditis elegans
• Alignment Length: 601
• Identity: 147/601 - (24%)
• Similarity: 238/601 - (39%)
• Gaps: 143/601 - (23%)

  Fly    14 PL-PRTPLLTIWLAINMALIAQETGHKRIHTVQAATGGGSMLGDVNISAILDSFSVSYDKRVRPN 77
            || |.||..|     |......|.|.:..               .:...|::....:|.....|:
 Worm    40 PLPPTTPFPT-----NAVAATDEDGEELC---------------TSDKTIIEKLLNNYKSFRTPS 84

  Fly    78 YGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRK-RPGVETLSVGSEFIKNIW 141
            ..|  |.|.:.::|..::|::|:..||.:|.|..:.|.|..|.|.. .|....||:.||.:..||
 Worm    85 ESG--VIVWIEVWVQEVNSVNEITSDFDMDIYVTELWMDSALRYEHLNPCKYNLSLNSEILDQIW 147

  Fly   142 VPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESF 206
            .|:|.|:|.|.:..|.:...|.|:.::.:|::..:.|:.:...|.|:...||||:|.||:.:|||
 Worm   148 KPNTVFINSKSANIHKSPFKNVFLMIYPNGTVWVNYRVQVKGPCSMDFSAFPMDQQSCHLTLESF 212

  Fly   207 GYTMRDIRYFWRDGLSSVG-MSSEVELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYY 270
            .|..:::...|.:..:.:. :..|:.||.|.:..:...........|.::.|.....|.|..|:|
 Worm   213 SYNNQEVDMQWMNWTTPLSLLKKEIVLPDFVMSNYSTSLKHEIYPAGVWNELTMTFVFSRRYGWY 277

  Fly   271 LIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLG 335
            :.|.|||:.|.:.|||:||.|.....|||..|||.::|.:|....:....||::||||::||::.
 Worm   278 IFQAYIPTYLTIFISWISFCLGPKMIPARTMLGVNSLLALTFQFGNIMRNLPRVSYVKALDVWML 342

  Fly   336 TCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANPNPNANVGGPGG 400
            .|...||.||||.|.:|.|..|.:.|:         |:|:|||.:.|.:.|.
 Worm   343 VCLTFVFCSLLELAIIGSMGARSENRQ---------AQQQKQQDEEATKHQK------------- 385

  Fly   401 VGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTR 465
                        |..|......|.|.            ..|::|:...::.|   :::.|:..:.
 Worm   386 ------------GRENSTCSHLMSPS------------SCPNSPRICRNHIP---NDVPQSFKSY 423

  Fly   466 GCSIVGPLFQEVRFKVHDPKAHSK-----GGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGG 525
            |.:              ||:...:     ..|:.:..|..|.
 Worm   424 GST--------------DPRMRKRLIIASSSTISHAPNANRS----------------------- 451

  Fly   526 GGGGPPEGGGDPEAAVPAHLLHPG-----------KVKKVKDINKLLGITPSDIDKYSRIVFPVC 579
                            ...||..|           |...:..|......|..:||:.|.|:||..
 Worm   452 ----------------EKVLLLDGLEETQFSQVETKFSSMASIKMKKHWTTEEIDRLSMIMFPGL 500

  Fly   580 FVCFNLMYWIIYLHVS 595
            |..||::||..||.|:
 Worm   501 FTLFNIIYWTYYLTVN 516

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	51/184 (28%)
		Neur_chan_memb	274..588	CDD:397193	74/329 (22%)
acc-3	NP_508810.2	Neur_chan_LBD	69..512	CDD:332142	135/546 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.910