Protein Alignment Rdl and lgc-48

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_506308.3
• Gene: lgc-48 / 183638
• WormBaseID: WBGene00008223
• Length: 366
• Species: Caenorhabditis elegans
• Alignment Length: 352
• Identity: 94/352 - (26%)
• Similarity: 177/352 - (50%)
• Gaps: 21/352 - (5%)

  Fly    23 IWLAINMALIAQETGHKRIHTVQAATGGGSMLGDVNISAILDSF--SVSYDKRVRPNYGGPPVEV 85
            |:|.:.:|::.:|     :|.:::..        :|.:.:::..  ...|.|...|...|  :.|
 Worm     5 IFLGLLVAVLGEE-----VHELRSEC--------LNEAQLMEKLLKGSGYSKHKIPRENG--ITV 54

  Fly    86 GVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVE-TLSVGSEFIKNIWVPDTFFVN 149
            .|..::..|:|:||:..||.|:.:..:.||||.|.:......: .|::..:.:..:|.|:|.|||
 Worm    55 SVEFWIQEINSISEMTNDFELELFINEMWTDPSLRFPHLGACKANLTLDQQTLTKLWTPNTCFVN 119

  Fly   150 EKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIR 214
            .|.:..:.::..|.|:.:..:|::..:.|:.:..:|.|:|..||||.|.|.:..:||.|...::|
 Worm   120 SKFAEIYESSFQNVFLTLFDNGTVWVNYRVRVKGACNMDLVDFPMDTQSCRLNYQSFTYNNEEVR 184

  Fly   215 YFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSG 279
            ..|....|.|....|:.:..|.:........:.:...|.:..|.....|.|...:|.:|.|:|:.
 Worm   185 LQWNSQRSPVFALQEIRIADFWLKDITPAVIKRDYPAGLWDELVVTFVFERRYMWYFLQAYLPTF 249

  Fly   280 LIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFAS 344
            ..:.|||::|.|...|...|..:||..:|:|.....|....||::||:|:|||::.:....||.|
 Worm   250 FSIFISWIAFSLGPQAITPRTMIGVNALLSMIFHFGSIMKNLPRVSYIKAIDVWMLSSMTFVFLS 314

  Fly   345 LLEYATVGYMAKRIQMRKQRFMAIQKI 371
            |:|.|.|||   ::|:::::...|:|:
 Worm   315 LIELAIVGY---KLQIQREKEHVIEKV 338

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	47/183 (26%)
		Neur_chan_memb	274..588	CDD:397193	34/98 (35%)
lgc-48	NP_506308.3	Neur_chan_LBD	28..237	CDD:280998	52/210 (25%)
		Neur_chan_memb	245..>323	CDD:280999	29/77 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.910