Protein Alignment Rdl and lgc-55

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_507870.2
• Gene: lgc-55 / 180312
• WormBaseID: WBGene00013746
• Length: 538
• Species: Caenorhabditis elegans
• Alignment Length: 571
• Identity: 140/571 - (24%)
• Similarity: 235/571 - (41%)
• Gaps: 150/571 - (26%)

  Fly    53 MLGDVNISA--ILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWT 115
            :||....:|  ||......||:.:.|...|  |:|.|.:.:..:|.:||::...|:...|.|.|.
 Worm    80 VLGQAEKAATRILTELLSKYDRNLVPKMKG--VDVDVELLIQRVSEISEIQSSSTMHILFSQIWH 142

  Fly   116 DPRLAYRKRPG---VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSI 177
            ||.|::....|   :..||:....:.|||:|:...||.|.|..|.:.|.|.|:.:..:|::..:.
 Worm   143 DPGLSFEHEEGAHCLTNLSLSHRMVDNIWLPNVCIVNSKGSAIHKSPTPNIFLAIFPNGTVWMNY 207

  Fly   178 RLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGH-R 241
            |:.:.:.|.|:..:|||||.:|....||:.:.:..:|..|:.....|....:|:||.|.:... .
 Worm   208 RVVVESPCEMDFSFFPMDRVMCTTIFESYAFNVGKVRLHWKRQGQPVEFIDDVKLPDFHMTKFVH 272

  Fly   242 QRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTT 306
            ::||.| ...|.:.:|..::.|.||.|:|::|||:|:..:|:|||:||||:|.:.||||.|||::
 Worm   273 EKATFI-YPAGVWDQLNIKLLFRRSYGFYILQIYLPTYCMVLISWISFWLDRRSLPARVTLGVSS 336

  Fly   307 VLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQR---FMAI 368
            ::.:|...|:.:.:|||:||||.:|:::..|.|.:|.|::|.|.||.:.:|.|.|...   |::.
 Worm   337 LMALTLQYSNVSRSLPKVSYVKGLDLFMFGCIVYIFLSIVELAVVGSLEQRKQQRTNADGDFLSD 401

  Fly   369 QKIAEQKKQQLDGANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGH 433
            ..|.:...|:.......::                                        |:|..|
 Worm   402 DDIKKNIFQRTFSTKSFKS----------------------------------------GYGARH 426

  Fly   434 HAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVN 498
            |..|.                            |:                 :...||....|..
 Worm   427 HQFSE----------------------------CA-----------------SPEDGGEWPKTRT 446

  Fly   499 GGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGI 563
            ..........|.|                 .|||....||....::             ||:|.:
 Worm   447 EWAERTYVECPEP-----------------EPPESNRHPEVENDSN-------------NKMLVL 481

  Fly   564 -----------------------TPSDIDKYSRIVFPVCFVCFNLMYWIIY 591
                                   |..|:|::.:.:||:.|...||:||:.|
 Worm   482 VRQRRASRKRRKRLMSGKLFQRWTAEDMDRFCQKLFPITFTFCNLIYWMYY 532

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	53/186 (28%)
		Neur_chan_memb	274..588	CDD:397193	70/339 (21%)
lgc-55	NP_507870.2	Neur_chan_LBD	88..295	CDD:280998	60/209 (29%)
		LIC	90..532	CDD:273305	136/559 (24%)
		Neur_chan_memb	304..>391	CDD:280999	39/86 (45%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.910