DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdl and lgc-49

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_505841.2 Gene:lgc-49 / 179547 WormBaseID:WBGene00010741 Length:457 Species:Caenorhabditis elegans


Alignment Length:539 Identity:126/539 - (23%)
Similarity:204/539 - (37%) Gaps:163/539 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 AILDSF--SVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAY-R 122
            ||:|..  ...|:|...||..|.||:  |..:|.:|:|::|:..||.:|.|..:.|.||.|.: .
 Worm    56 AIIDKLLNGTGYNKFRIPNENGVPVQ--VEFWVQAITSINEITNDFEMDIYINEMWLDPALKFDH 118

  Fly   123 KRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPM 187
            ..|..:.|||..:.::.:|.|::.|||.|.:..|.:...|.|:.::.:|::..:.|:.:...|.:
 Worm   119 LNPCKQNLSVSHQVLEQLWTPNSCFVNSKFAEIHDSPFKNVFLMIYPNGTVWVNYRVNVKGPCDL 183

  Fly   188 NLQYFPMDRQLCHIEIESFGYTMRDIRYFWRD-GLSSVGMSSEVELPQFRVLGHRQRATEINLTT 251
            :|:.||:|.|.||:..|||.|..:::|..|.: ....|.:::::.||.|.::.............
 Worm   184 SLELFPLDIQECHLIYESFNYNNQEVRMRWNEKSAEPVSVTNKIRLPDFELIKIESTRISAPYPA 248

  Fly   252 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSS 316
            |.:..|..::.|.|...:|.:|.|:|:.|.:.|||:||.|...|.|||..|||..:|.|.....:
 Worm   249 GMWDELHVKLVFERRYIWYFMQAYLPTYLTIFISWISFSLGTKAMPARTMLGVNALLAMIFQFGN 313

  Fly   317 TNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDG 381
            ....||::||||:|||::......:|.||||.|.|||..|..:..|::.                
 Worm   314 IMRNLPRVSYVKAIDVWMLVSMTFIFLSLLELAIVGYKTKNEEGSKKKC---------------- 362

  Fly   382 ANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQ 446
                                                                       ||  |:
 Worm   363 -----------------------------------------------------------PH--KK 366

  Fly   447 TVSN---RPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSK-GGTLENTVNGGRGGPQSH 507
            .:.|   .|.|...                 .|.||.:...:..:: ||.:...|          
 Worm   367 LLDNFEASPAGLCR-----------------YEKRFMLPVERRSARWGGIIRFQV---------- 404

  Fly   508 GPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYS 572
                                                             .......:|..||:.|
 Worm   405 -------------------------------------------------FQDFWNWSPEKIDRVS 420

  Fly   573 RIVFPVCFVCFNLMYWIIY 591
            .|:||.||..||::||..|
 Worm   421 AIMFPACFAIFNIVYWSYY 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 50/184 (27%)
Neur_chan_memb 274..588 CDD:397193 61/317 (19%)
lgc-49NP_505841.2 LIC 53..439 CDD:273305 125/537 (23%)
Neur_chan_LBD 57..264 CDD:280998 59/208 (28%)
Neur_chan_memb 272..436 CDD:280999 61/316 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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