DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and acc-4

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001379219.1 Gene:acc-4 / 176778 WormBaseID:WBGene00012099 Length:408 Species:Caenorhabditis elegans


Alignment Length:319 Identity:106/319 - (33%)
Similarity:169/319 - (52%) Gaps:16/319 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 HTVQAATGGGSMLGDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTL 106
            ||.:...|     .|..|:.|||    .|:|...|  ||..|.|.:.::|..:|.:.|:..:|.|
 Worm    44 HTEKTCMG-----DDAIIAQILD----GYNKLDLP--GGGHVVVSIEIWVQEVSKIIEITSEFEL 97

  Fly   107 DFYFRQFWTDPRLAY-RKRPGVETLSV-GSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHH 169
            |.|..:.||||.||| ...|....:|| |:..:..||.|...|||.|.:..|.:...|.|::::.
 Worm    98 DIYVTERWTDPSLAYSHLNPCKSNMSVDGATILNKIWNPHACFVNSKLANIHESPFKNIFLQIYS 162

  Fly   170 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVG-MSSEVELP 233
            :|||..:.|:.:|..|...|:.||:|:|.|.:..|||.:....::..|...:..:. :...:.||
 Worm   163 NGSIWHNYRIKLTGPCSSTLRTFPIDQQRCMLFYESFTHNTDQVKMEWITTVPPITILKGNITLP 227

  Fly   234 QFRVLGHRQRATEINL-TTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATP 297
            .: ||.....::|:.| ..|.::.|.....|.|..|:|::|:|:|:.:.|.||||||.|.....|
 Worm   228 DY-VLVDFSSSSELRLYPPGIFNELIATFTFQRLYGFYILQVYVPAYISVFISWVSFTLGAEQIP 291

  Fly   298 ARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAK 356
            :|..:||.::|.:|....:....|||.|.||:|||::.:....:||||:|.|.|||:::
 Worm   292 SRTTVGVNSLLALTFQFGAVVNNLPKTSDVKAIDVWILSSMAFIFASLIELAVVGYLSR 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 55/186 (30%)
Neur_chan_memb 274..588 CDD:397193 34/83 (41%)
acc-4NP_001379219.1 LGIC_ECD_GABAAR 74..259 CDD:349791 55/185 (30%)
LGIC_TM_anion 263..396 CDD:349851 36/88 (41%)
TM1 helix 266..286 CDD:349851 10/19 (53%)
TM2 helix 295..316 CDD:349851 4/20 (20%)
TM3 helix 326..348 CDD:349851 9/21 (43%)
TM4 helix 375..396 CDD:349851
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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