Sequence 1: | NP_001261617.1 | Gene: | Rdl / 39054 | FlyBaseID: | FBgn0004244 | Length: | 608 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001379219.1 | Gene: | acc-4 / 176778 | WormBaseID: | WBGene00012099 | Length: | 408 | Species: | Caenorhabditis elegans |
Alignment Length: | 319 | Identity: | 106/319 - (33%) |
---|---|---|---|
Similarity: | 169/319 - (52%) | Gaps: | 16/319 - (5%) |
- Green bases have known domain annotations that are detailed below.
Fly 42 HTVQAATGGGSMLGDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTL 106
Fly 107 DFYFRQFWTDPRLAY-RKRPGVETLSV-GSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHH 169
Fly 170 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVG-MSSEVELP 233
Fly 234 QFRVLGHRQRATEINL-TTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATP 297
Fly 298 ARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAK 356 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Rdl | NP_001261617.1 | LGIC_ECD_GABAR_RDL-like | 83..266 | CDD:349809 | 55/186 (30%) |
Neur_chan_memb | 274..588 | CDD:397193 | 34/83 (41%) | ||
acc-4 | NP_001379219.1 | LGIC_ECD_GABAAR | 74..259 | CDD:349791 | 55/185 (30%) |
LGIC_TM_anion | 263..396 | CDD:349851 | 36/88 (41%) | ||
TM1 helix | 266..286 | CDD:349851 | 10/19 (53%) | ||
TM2 helix | 295..316 | CDD:349851 | 4/20 (20%) | ||
TM3 helix | 326..348 | CDD:349851 | 9/21 (43%) | ||
TM4 helix | 375..396 | CDD:349851 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3644 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.910 |