Protein Alignment Rdl and lgc-34

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_493752.1
• Gene: lgc-34 / 173443
• WormBaseID: WBGene00020836
• Length: 390
• Species: Caenorhabditis elegans
• Alignment Length: 349
• Identity: 85/349 - (24%)
• Similarity: 148/349 - (42%)
• Gaps: 52/349 - (14%)

  Fly    23 IWLAINMALIAQETGHKRIHTVQAATGGGSMLGDVNISAILDSFSVSYDKRVRPNYGGPPVEVGV 87
            |:|.:.:..|...:..|..|:.:..|.|..      :..||..:..|....||.:.....:.|..
 Worm     4 IFLFLVLLSIGVCSAQKAFHSRRLGTEGQI------VGRILSEYDSSSRPPVRDHADNSAILVIT 62

  Fly    88 TMYVLSI---SSLSEVKMDFTLDFYFRQFWTDPRLAY--RKRPGVETLSVGSEFIKNIWVPDTFF 147
            .:::..:   ::.:||      |.|.||.|.|.||.|  ..|.|::.:.:...  :.||.|||:|
 Worm    63 NIFINRLIWHNNYAEV------DLYLRQQWQDSRLKYDVDTREGIDEIRLPGN--RKIWEPDTYF 119

  Fly   148 V-------NEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQY-FPMDRQLCHIEIE 204
            .       |||.|         :.|.|..||.|..|.|:.:.........: |...||.. |::.
 Worm   120 TSGKELSRNEKNS---------KHIVVEPSGYIRSSERVLLELPYAYGTMFPFTNSRQFT-IKLG 174

  Fly   205 SFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLG----HRQRATEI--NLTTGNYSRLACEIQF 263
            |:.|.:.||.|.|   .:|..:.:.:|:.|..:.|    ....|.:.  |.|.|.||.:...:.|
 Worm   175 SYNYDIDDIVYLW---ANSPPLVNPIEVSQDLLKGDLTFEEASAGDCVGNYTVGVYSCIDAHVYF 236

  Fly   264 VRSMGYYLIQIYIPSGLIVIISWVSFWLNRN-ATPARVALGVTTVLTMTTLMSSTNAALPKISYV 327
            ..|....|:..::||..::|.||:.||::.: :.|..::..|...     ::::....:.:.||.
 Worm   237 SASTISGLMSWFLPSLFLLIGSWLHFWIHGSWSVPRTISAAVPFF-----ILAAYYIFMREDSYT 296

  Fly   328 KSIDVYLGTCFVMVFASLLEYATV 351
            ::...:|..|.|:.|.|.:||..|
 Worm   297 QAQGAWLAFCLVLTFFSFVEYFLV 320

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	52/201 (26%)
		Neur_chan_memb	274..588	CDD:397193	19/79 (24%)
lgc-34	NP_493752.1	LIC	1..388	CDD:273305	85/349 (24%)
		LGIC_ECD_anion	58..237	CDD:349788	51/199 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810