Protein Alignment Rdl and avr-14

DIOPT Version :10

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_001020963.1
• Gene: avr-14 / 172270
• WormBaseID: WBGene00000232
• Length: 430
• Species: Caenorhabditis elegans
• Alignment Length: 390
• Identity: 147/390 - (37%)
• Similarity: 220/390 - (56%)
• Gaps: 67/390 - (17%)

  Fly    20 LLTIWLAINMALIAQETGHKRIHTVQAATGGGSMLGDVNISAILDSFSVSYDKRVR--------P 76
            |.||.|.|::           ||:::|..       .:....|:......||.|||        |
 Worm     6 LTTILLIISI-----------IHSIRAKR-------KLKEQEIIQRILKDYDWRVRPRGMNATWP 52

  Fly    77 NYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRK--RPG--------VETLS 131
            :.|| ||.|.|.:|:.|||.:.:|.|:::..|.||:.|||.||||.:  ..|        |...|
 Worm    53 DTGG-PVLVTVNIYLRSISKIDDVNMEYSAQFTFREEWTDQRLAYERYEESGDTEVPPFVVLATS 116

  Fly   132 VGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDR 196
            ..::..:.||:|||||.|||::..|:....|..||:|.:|.|..|:||::..||||:|:::|:||
 Worm   117 ENADQSQQIWMPDTFFQNEKEARRHLIDKPNVLIRIHKNGQILYSVRLSLVLSCPMSLEFYPLDR 181

  Fly   197 QLCHIEIESFGYTMRDIRYFW--------RDGLSSVGMSSEVELPQFRVLGHRQRATE--INLT- 250
            |.|.|::.|:.||.:||:|.|        :|||..       .||.|.:   :...|:  .:||
 Worm   182 QNCLIDLASYAYTTQDIKYEWKEKKPIQQKDGLRQ-------SLPSFEL---QDVVTDYCTSLTN 236

  Fly   251 TGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMS 315
            ||.||.....::..|...|||||:|||..::|::|||||||:::|.||||:|||||:|||||..|
 Worm   237 TGEYSCARVVLRLRREYSYYLIQLYIPCIMLVVVSWVSFWLDKDAVPARVSLGVTTLLTMTTQAS 301

  Fly   316 STNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLD 380
            ..|:.||.:||:|::||::|.|...:|.:|||||.|.|..::..:||::         :||.::|
 Worm   302 GINSKLPPVSYIKAVDVWIGVCLAFIFGALLEYAVVNYYGRKEFLRKEK---------KKKTRID 357

  Fly   381  380
             Worm   358  357

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	73/203 (36%)
		Cys-loop	185..199	CDD:349809	8/13 (62%)
		Neur_chan_memb	274..588	CDD:460753	50/107 (47%)
avr-14	NP_001020963.1	LIC	20..424	CDD:273305	140/365 (38%)