DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and glc-2

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_491470.1 Gene:glc-2 / 172103 WormBaseID:WBGene00001592 Length:434 Species:Caenorhabditis elegans


Alignment Length:344 Identity:135/344 - (39%)
Similarity:204/344 - (59%) Gaps:25/344 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 ILDSFSVSYDKRVRPNYGGPP--------VEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPR 118
            ||::...:||.||||    ||        |.|.|.:.:..:|.:..|.|::::...||:.|.|||
 Worm    32 ILNALLKNYDMRVRP----PPANSSTEGAVNVRVNIMIRMLSKIDVVNMEYSIQLTFREQWIDPR 92

  Fly   119 LAYR-----KRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIR 178
            |||.     ..|...|:   ....|::|:|||||..||.::.|:....|.|:|::..|.|..|.|
 Worm    93 LAYENLGFYNPPAFLTV---PHVKKSLWIPDTFFPTEKAAHRHLIDMENMFLRIYPDGKILYSSR 154

  Fly   179 LTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEV--ELPQFRVLGHR 241
            :::|:||||.||.:|:|.|.|:.::.|:.:||.||.|.| |..:.|.:...|  :||.|.:..:.
 Worm   155 ISLTSSCPMRLQLYPLDYQSCNFDLVSYAHTMNDIMYEW-DPSTPVQLKPGVGSDLPNFILKNYT 218

  Fly   242 QRATEINLT-TGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVT 305
            ..|...:.| ||:|..|..::.|.|...|||:|:|.|:.:|||:||||||::.::|..|||||||
 Worm   219 TNADCTSHTNTGSYGCLRMQLLFKRQFSYYLVQLYAPTTMIVIVSWVSFWIDLHSTAGRVALGVT 283

  Fly   306 TVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQK 370
            |:|||||:.|:.||.||.:||||.:||:||.|...||.:|||||.|.|.....|..:.|..|.:|
 Worm   284 TLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTFVFGALLEYAFVSYQDSVRQNDRSREKAARK 348

  Fly   371 IAEQKKQQLDGANQQQANP 389
             |::::::|:..:.:...|
 Worm   349 -AQRRREKLEMVDAEVYQP 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 65/190 (34%)
Neur_chan_memb 274..588 CDD:397193 55/116 (47%)
glc-2NP_491470.1 LIC 29..419 CDD:273305 135/344 (39%)
Neur_chan_LBD 29..244 CDD:280998 75/219 (34%)
Neur_chan_memb 252..417 CDD:280999 55/116 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X271
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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