DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdl and Glra4

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_034427.2 Gene:Glra4 / 14657 MGIID:95750 Length:456 Species:Mus musculus


Alignment Length:595 Identity:180/595 - (30%)
Similarity:279/595 - (46%) Gaps:159/595 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LPRTPLLTIW-----LAINMALIAQETGHKRIHTVQAATGGGSMLGDVNISAILDSFSVSYDKRV 74
            :|.:..|.:|     :.:::||..::        |::...|...:...:....|...:..||.|:
Mouse     5 VPASLFLLLWTLPGKVLLSVALAKED--------VKSGLKGSQPMSPSDFLDKLMGRTSGYDARI 61

  Fly    75 RPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKN 139
            |||:.||||.|...:::.|..|::|..||:.::.:.||.|.|||||||:.|. ::|.:....:.:
Mouse    62 RPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNVFLRQQWNDPRLAYREYPD-DSLDLDPSMLDS 125

  Fly   140 IWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIE 204
            ||.||.||.|||.:.||..||.|:.:|:..:|::..|||||:..||||:|:.||||.|.|.:::|
Mouse   126 IWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLE 190

  Fly   205 SFGYTMRDIRYFWRDGLSSVGMSSEVELPQF-----RVLGHRQRATEINLTTGNYSRLACEIQFV 264
            ||||||.|:.:.|.:...:|.::..:.||||     :.||:..:    :..||.::.:..:....
Mouse   191 SFGYTMNDLMFEWLEDAPAVQVAEGLTLPQFILRDEKDLGYCTK----HYNTGKFTCIEVKFHLE 251

  Fly   265 RSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKS 329
            |.|||||||:||||.||||:||||||:|.:|.||||.||:||||||||..|.:.|:|||:||||:
Mouse   252 RQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKA 316

  Fly   330 IDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANPNPNAN 394
            ||:::..|.:.|||:|||||.|.::::    :.:.||.:::  .|::|:::              
Mouse   317 IDIWMAVCLLFVFAALLEYAAVNFVSR----QHKEFMRLRR--RQRRQRME-------------- 361

  Fly   395 VGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQ 459
                                                                             
Mouse   362 ----------------------------------------------------------------- 361

  Fly   460 QNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGG 524
                       ..:.:|.||..   :.:..|..|:                              
Mouse   362 -----------EDIIRESRFYF---RGYGLGHCLQ------------------------------ 382

  Fly   525 GGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWI 589
            ...|||.||........|..||..|:.     :.||.......||..||.|||..|:.||:.||:
Mouse   383 ARDGGPMEGSSIYSPQPPTPLLKEGET-----MRKLYVDRAKRIDTISRAVFPFTFLVFNIFYWV 442

  Fly   590 IY--LHVSDV 597
            :|  |...|:
Mouse   443 VYKVLRSEDI 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 69/187 (37%)
Neur_chan_memb 274..588 CDD:397193 81/313 (26%)
Glra4NP_034427.2 LIC 9..444 CDD:273305 176/581 (30%)
Strychnine-binding. /evidence=ECO:0000250|UniProtKB:O93430 236..241 2/4 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H69070
Inparanoid 1 1.050 344 1.000 Inparanoid score I2310
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X271
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.860

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