DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdl and Gabrg1

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_034382.2 Gene:Gabrg1 / 14405 MGIID:103156 Length:465 Species:Mus musculus


Alignment Length:541 Identity:156/541 - (28%)
Similarity:235/541 - (43%) Gaps:138/541 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 GDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRL 119
            ||  |:.||:|....||.::||:.|..|..:...:||.||..:..:.|::|:|..|.|.|.|.||
Mouse    62 GD--ITQILNSLLQGYDNKLRPDIGVRPTVIETDVYVNSIGPVDPINMEYTIDIIFAQTWFDSRL 124

  Fly   120 AYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITAS 184
            .:...  ::.|.:.|..:..||:|||||.|.::|..|..||.|..:|:...|.:..::||||.|.
Mouse   125 KFNST--MKVLMLNSNMVGKIWIPDTFFRNSRKSDAHWITTPNRLLRIWSDGRVLYTLRLTINAE 187

  Fly   185 CPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINL 249
            |.:.|..||||...|.:|..|:||...:|.|.|:.....|.......|.||..:|.| .:|||:.
Mouse   188 CYLQLHNFPMDEHSCPLEFSSYGYPKNEIEYKWKKPSVEVADPKYWRLYQFAFVGLR-NSTEISH 251

  Fly   250 T-TGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTL 313
            | :|:|..:.......|.|||:.||.|||..|.|::||||||:|::|.|||.:||:|||||||||
Mouse   252 TISGDYIIMTIFFDLSRRMGYFTIQTYIPCILTVVLSWVSFWINKDAVPARTSLGITTVLTMTTL 316

  Fly   314 MSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQ 378
            .:....:|||:|||.::|:::..||:.|||:|:||.|:.|.....:.:..|...::         
Mouse   317 STIARKSLPKVSYVTAMDLFVSVCFIFVFAALMEYGTLHYFTSNNKGKTTRGRKLK--------- 372

  Fly   379 LDGANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHA 443
                |:..|:|            |:..|....|...:::..|     |..:|:            
Mouse   373 ----NKTSASP------------GLHAGSTLIPMNSISLPQG-----EDDYGY------------ 404

  Fly   444 PKQTVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHG 508
                            |.:..:.|:.....|.:.|          .|...|..::          
Mouse   405 ----------------QCLEGKDCTSFFCCFDDCR----------TGSWREGRIH---------- 433

  Fly   509 PGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSR 573
                                                                  |..:.||.|||
Mouse   434 ------------------------------------------------------IRIAKIDSYSR 444

  Fly   574 IVFPVCFVCFNLMYWIIYLHV 594
            |.||..|..|||:||:.||::
Mouse   445 IFFPTAFALFNLVYWVGYLYL 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 61/183 (33%)
Neur_chan_memb 274..588 CDD:397193 73/313 (23%)
Gabrg1NP_034382.2 Neur_chan_LBD 65..270 CDD:280998 71/207 (34%)
LIC 66..462 CDD:273305 151/530 (28%)
Neur_chan_memb 277..459 CDD:280999 73/313 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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