Protein Alignment Rdl and Gabrg1

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_542153.1
• Gene: Gabrg1 / 140674
• RGDID: 621732
• Length: 465
• Species: Rattus norvegicus
• Alignment Length: 541
• Identity: 155/541 - (28%)
• Similarity: 234/541 - (43%)
• Gaps: 138/541 - (25%)

  Fly    55 GDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRL 119
            ||  |:.||:|....||.::||:.|..|..:...:||.||..:..:.|::|:|..|.|.|.|.||
  Rat    62 GD--ITQILNSLLQGYDNKLRPDIGVRPTVIETDVYVNSIGPVDPINMEYTIDIIFAQTWFDSRL 124

  Fly   120 AYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITAS 184
            .:...  ::.|.:.|..:..||:|||||.|.::|..|..||.|..:|:...|.:..::||||.|.
  Rat   125 KFNST--MKVLMLNSNMVGKIWIPDTFFRNSRKSDAHWITTPNRLLRIWSDGRVLYTLRLTINAE 187

  Fly   185 CPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINL 249
            |.:.|..||||...|.:|..|:||...:|.|.|:.....|.......|.||..:|.| .:|||:.
  Rat   188 CYLQLHNFPMDEHSCPLEFSSYGYPKNEIEYKWKKPSVEVADPKYWRLYQFAFVGLR-NSTEISH 251

  Fly   250 T-TGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTL 313
            | :|:|..:.......|.|||:.||.|||..|.|::||||||:|::|.|||.:||:|||||||||
  Rat   252 TISGDYIIMTIFFDLSRRMGYFTIQTYIPCILTVVLSWVSFWINKDAVPARTSLGITTVLTMTTL 316

  Fly   314 MSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQ 378
            .:....:|||:|||.::|:::..||:.|||:|:||.|:.|....               .:.|..
  Rat   317 STIARKSLPKVSYVTAMDLFVSVCFIFVFAALMEYGTLHYFTSN---------------NKGKTT 366

  Fly   379 LDGANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHA 443
            .|...:.:.:.:|          |:..|....|...:::..|     |..:|:
  Rat   367 RDRKLKSKTSVSP----------GLHAGSTLIPMNNISMPQG-----EDDYGY------------ 404

  Fly   444 PKQTVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHG 508
                            |.:..:.|:.....|::.|          .|...|..::
  Rat   405 ----------------QCLEGKDCATFFCCFEDCR----------TGSWREGRIH---------- 433

  Fly   509 PGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSR 573
                                                                  |..:.||.|||
  Rat   434 ------------------------------------------------------IRIAKIDSYSR 444

  Fly   574 IVFPVCFVCFNLMYWIIYLHV 594
            |.||..|..|||:||:.||::
  Rat   445 IFFPTAFALFNLVYWVGYLYL 465

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	61/183 (33%)
		Neur_chan_memb	274..588	CDD:397193	72/313 (23%)
Gabrg1	NP_542153.1	Neur_chan_LBD	65..270	CDD:280998	71/207 (34%)
		LIC	66..462	CDD:273305	150/530 (28%)
		Neur_chan_memb	277..459	CDD:280999	72/313 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.910