DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and LOC1281130

DIOPT Version :10

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_321068.3 Gene:LOC1281130 / 1281130 VectorBaseID:AGAMI1_001548 Length:212 Species:Anopheles gambiae


Alignment Length:130 Identity:59/130 - (45%)
Similarity:86/130 - (66%) Gaps:1/130 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 MSSEVELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFW 290
            ::.|:||||..:..:......|..:|||::.||......|.:||:|...||||.|||::||:|||
Mosquito     7 VNPEIELPQLDISNNYTTDCTIEYSTGNFTCLAVVFNLRRRLGYHLFHTYIPSALIVVMSWISFW 71

  Fly   291 LNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATV-GYM 354
            :...|.||||.||||::||:.|..:.:..:||.:||||:|||::.:|.|.||.||:|:|.| .||
Mosquito    72 IKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSVFVFLSLMEFAVVNNYM 136

  Fly   355  354
            Mosquito   137  136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 11/39 (28%)
Cys-loop 185..199 CDD:349809
Neur_chan_memb 274..588 CDD:460753 44/82 (54%)
LOC1281130XP_321068.3 LGIC_ECD <1..47 CDD:475126 11/39 (28%)
LGIC_TM_anion 50..>136 CDD:349851 44/85 (52%)
TM1 helix 50..73 CDD:349851 14/22 (64%)
TM2 helix 77..101 CDD:349851 11/23 (48%)
TM3 helix 109..135 CDD:349851 13/25 (52%)
Blue background indicates that the domain is not in the aligned region.

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