Protein Alignment Rdl and Glra3

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_446176.3
• Gene: Glra3 / 114516
• RGDID: 621229
• Length: 480
• Species: Rattus norvegicus
• Alignment Length: 578
• Identity: 181/578 - (31%)
• Similarity: 271/578 - (46%)
• Gaps: 158/578 - (27%)

  Fly    26 AINMALIA-QETGHKRIHTVQAATGGGSMLGDVNISAILDSF---SVSYDKRVRPNYGGPPVEVG 86
            |:.::|:| :||...|           |....::.|..||..   :..||.|:|||:.||||.|.
  Rat    36 ALLLSLVATKETNSAR-----------SRSAPMSPSDFLDKLMGRTSGYDARIRPNFKGPPVNVT 89

  Fly    87 VTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEK 151
            ..:::.|..|::|..||:.::.:.||.|.||||||.:.|. ::|.:....:.:||.||.||.|||
  Rat    90 CNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEK 153

  Fly   152 QSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYF 216
            .:.||..||.|:.:|:..:|::..|||||:|.||||:|:.||||.|.|.:::|||||||.|:.:.
  Rat   154 GANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFE 218

  Fly   217 WRDGLSSVGMSSEVELPQFRVLGHRQ-RATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGL 280
            |:|. :.|.::..:.||||.:...:. |....:..||.::.:.......|.|||||||:||||.|
  Rat   219 WQDE-APVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPSLL 282

  Fly   281 IVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASL 345
            |||:||||||:|.:|.|||||||:||||||||..|.:.|:|||:||||:||:::..|.:.||::|
  Rat   283 IVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSAL 347

  Fly   346 LEYATVGYMAKR----IQMRKQRFMAIQKIAEQKKQQLDGANQQQANPNPNANVGGPGGVGVGPG 406
            ||||.|.:::::    ::.|::|....:..|.:|..:
  Rat   348 LEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEKFYR---------------------------- 384

  Fly   407 GPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSIVG 471
                                                            ||:....|
  Rat   385 ------------------------------------------------FSDTDDEV--------- 392

  Fly   472 PLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGP---GQGGGPPGGGGGGGGGGGPPEG 533
               :|.||..                       .::|.||   .:.|..|.|
  Rat   393 ---RESRFSF-----------------------TAYGMGPCLQAKDGVVPKG------------- 418

  Fly   534 GGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIY 591
               |..||..      ..|...::.|:.......||..||..||:.|:.||:.||:||
  Rat   419 ---PNHAVQV------MPKSADEMRKVFIDRAKKIDTISRACFPLAFLIFNIFYWVIY 467

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	69/183 (38%)
		Neur_chan_memb	274..588	CDD:397193	81/320 (25%)
Glra3	NP_446176.3	LIC	28..467	CDD:273305	179/576 (31%)
		Neur_chan_LBD	63..269	CDD:280998	81/207 (39%)
		Neur_chan_memb	276..464	CDD:280999	81/320 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	341	1.000	Inparanoid score	I2275
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X271
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	4.860