Protein Alignment Rdl and gabra3

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: XP_021324929.1
• Gene: gabra3 / 100538116
• ZFINID: ZDB-GENE-091204-365
• Length: 306
• Species: Danio rerio
• Alignment Length: 291
• Identity: 103/291 - (35%)
• Similarity: 157/291 - (53%)
• Gaps: 20/291 - (6%)

  Fly    23 IWLAINMAL-IAQETGHKRIHTVQAATGGGSMLGDVN------ISAILDSFSVSYDKRVRPNYGG 80
            :|:.:::.. .:.:||        |.||....:.|.:      .:.|||.....||.|:||..|.
Zfish    15 VWILLSLLFNPSSQTG--------AVTGHREPIPDDSKDNITIFTRILDRLLDGYDNRLRPGLGA 71

  Fly    81 PPV-EVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPD 144
            ..| ||...:||.|...:|:..|::|:|.:|||.|.|.||.: ..| ::.|.:.:.....||.||
Zfish    72 ESVTEVRTNIYVTSFGPVSDTDMEYTIDVFFRQSWRDERLKF-DGP-MQVLPLNNLLASKIWTPD 134

  Fly   145 TFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYT 209
            |||.|.|:|..|..||.|:.:|:..:|::..::||||.|.|||:|:.||||...|.::..|:.||
Zfish   135 TFFHNGKKSVAHNMTTPNKLLRLVDNGTLLYTMRLTIHAECPMHLEDFPMDAHACPLKFGSYAYT 199

  Fly   210 MRDIRYFW-RDGLSSVGMSSE-VELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLI 272
            ..::.|.| .|...||.::.: ..|.|:.:|||......|:.:||.|..:.......|.:||::|
Zfish   200 NNEVVYIWTADDEKSVSVAPDGSRLNQYDLLGHVIGKETISSSTGEYVVMTTYFHLKRKIGYFVI 264

  Fly   273 QIYIPSGLIVIISWVSFWLNRNATPARVALG 303
            |.|:|..:.||:|.|||||||.:.|||...|
Zfish   265 QTYLPCIMTVILSQVSFWLNRESVPARTVFG 295

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	66/185 (36%)
		Neur_chan_memb	274..588	CDD:397193	16/30 (53%)
gabra3	XP_021324929.1	Neur_chan_LBD	52..>295	CDD:332142	95/244 (39%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	LDO	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	3.010