DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and gabrb1

DIOPT Version :10

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_012811146.2 Gene:gabrb1 / 100489344 XenbaseID:XB-GENE-6049110 Length:477 Species:Xenopus tropicalis


Alignment Length:8 Identity:5/8 - (62%)
Similarity:7/8 - (87%) Gaps:0/8 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 YHFLLQLI 152
            |.|||:|:
 Frog   170 YQFLLELL 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 5/8 (63%)
Cys-loop 185..199 CDD:349809
Neur_chan_memb 274..588 CDD:460753
gabrb1XP_012811146.2 LIC 9..475 CDD:273305 5/8 (63%)
Blue background indicates that the domain is not in the aligned region.

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