DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdl and gabrb1

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_012811146.2 Gene:gabrb1 / 100489344 XenbaseID:XB-GENE-6049110 Length:477 Species:Xenopus tropicalis


Alignment Length:559 Identity:177/559 - (31%)
Similarity:275/559 - (49%) Gaps:142/559 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 ISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRK 123
            :...:|.....||.|:||::|||.||||:.:.|.||..:|||.||:||..||:|.|.|.||:|..
 Frog    37 VKETVDRLLKGYDIRLRPDFGGPSVEVGMRIDVASIDMVSEVNMDYTLTMYFQQSWRDKRLSYSG 101

  Fly   124 RPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMN 188
            .|  ..|::.:.....:|||||:|:|:|:|:.|..|..|..||:|..|::...:|:|.||:|.|:
 Frog   102 IP--LNLTLDNRVADQLWVPDTYFLNDKRSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMD 164

  Fly   189 LQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINLTTGN 253
            |:.:|:|.|.|.:||||:|||..||:::|..|..::....::|||||.::.::..:..:..:||.
 Frog   165 LRRYPLDEQNCTLEIESYGYTTDDIKFYWNGGDKAITGVEKIELPQFSIIDYKMVSRNVIFSTGA 229

  Fly   254 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTN 318
            |.||:...:..|::||:::|.|:||.||.|:||||||:|.:|:.||||||:||||||||:.:...
 Frog   230 YPRLSLSFRLKRNIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTISTHLR 294

  Fly   319 AALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYM--AKRIQMRKQRFMAIQKIAEQKKQQLDG 381
            ..||||.|||:||:||..|||.||.:|||||.|.|:  .|..|::|:.....:| |..:|.:|: 
 Frog   295 ETLPKIPYVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGKGPQLQKKAAEKAEK-ANNEKTKLE- 357

  Fly   382 ANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQ 446
            .|:.|.:                                                :||:......
 Frog   358 MNKVQVD------------------------------------------------AHGNILLTTL 374

  Fly   447 TVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKA-----------HSKGGTLENTVNGG 500
            .:.|...|                    .||...:.||:|           :.|           
 Frog   375 ELRNEVSG--------------------SEVLTSISDPRATMFSYDSASIQYRK----------- 408

  Fly   501 RGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGD--PEAAVPAHLLH-PGKVK--------KV 554
                                          |....|  ..:.:..|::| .|:::        |:
 Frog   409 ------------------------------PVANRDMYSRSTLDRHVVHKKGRLRRRASQIKIKI 443

  Fly   555 KDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLH 593
            .|:..:.|     ||::||::|||.|..||::||:.|:|
 Frog   444 PDLTDVNG-----IDRWSRMIFPVAFAFFNVVYWLYYIH 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 72/182 (40%)
Neur_chan_memb 274..588 CDD:397193 88/337 (26%)
gabrb1XP_012811146.2 LIC 9..475 CDD:273305 175/555 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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