Protein Alignment Rdl and gabra2a

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: XP_009305482.1
• Gene: gabra2a / 100150704
• ZFINID: ZDB-GENE-141216-16
• Length: 451
• Species: Danio rerio
• Alignment Length: 585
• Identity: 161/585 - (27%)
• Similarity: 239/585 - (40%)
• Gaps: 163/585 - (27%)

  Fly    20 LLTIWLAINMALIAQETGHKRIHTVQAATGGGSMLGDVNISAILDSFSVSYDKRVRPNYGGPPVE 84
            ||.:|.|.:.|.::.....|...|:              .:.|||.....||.|:||..|....|
Zfish    17 LLVLWRACSEAEVSGSDAFKNNITL--------------FTRILDRLLDGYDNRLRPGLGDRVTE 67

  Fly    85 VGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVN 149
            |...:||.|...:|:..|::|:|.:|||.|||.||.:.....:  |.:.:.....||.|||||.|
Zfish    68 VKTDIYVTSFGPVSDTDMEYTVDVFFRQRWTDERLKFHGPMNI--LRLNNLMASKIWTPDTFFHN 130

  Fly   150 EKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIR 214
            .|:|..|..|..|:.:|:..:|::..::|||:.|.|||:|:.||||...|.::..|:.||:.::.
Zfish   131 GKKSVAHNMTMPNKLLRIMENGTLLYTMRLTVQAECPMHLEDFPMDFHSCPLKFGSYAYTLTEVT 195

  Fly   215 YFW-RDGLSSVGMSSE-VELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIP 277
            |.| |:...||.::.: ..|.|:.::|.......|..:||.|:.:.......|.:||::||.|:|
Zfish   196 YVWTRNATLSVEVAPDGSRLNQYDLMGQTVGKETIKSSTGEYTVMTAHFHLKRKIGYFVIQTYLP 260

  Fly   278 SGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVF 342
            ..:.||:|.|||||||.:.|||...|||||||||||..|...:|||::|..::|.::..|:..||
Zfish   261 CIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVF 325

  Fly   343 ASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANPNPNANVGGPGGVGVGPGG 407
            ::|:|:|||.|..||......:     .|...||::.....:..|.....||..
Zfish   326 SALIEFATVNYFTKRGWAWDGK-----SIVNDKKKETSVMKKNNAYAVAVANYA----------- 374

  Fly   408 PGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQ----TVSNRPIGFSNIQQNVGTRGCS 468
                                             ||..|.    |||
Zfish   375 ---------------------------------PHIAKDSALPTVS------------------- 387

  Fly   469 IVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEG 533
                                                                             
Zfish   388 ----------------------------------------------------------------- 387

  Fly   534 GGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHVSDVV 598
                ::|.|    .|.|.:.|....|....:.|.||:.|||:|||.|..|||:||..||:...|:
Zfish   388 ----KSATP----EPSKAQPVAKETKKTFNSVSKIDRMSRIIFPVLFGSFNLVYWATYLNREPVI 444

  Fly   599  598
            Zfish   445  444

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	61/184 (33%)
		Neur_chan_memb	274..588	CDD:397193	74/317 (23%)
gabra2a	XP_009305482.1	LIC	17..437	CDD:273305	158/576 (27%)
		Neur_chan_LBD	43..250	CDD:280998	71/208 (34%)
		Neur_chan_memb	257..434	CDD:280999	74/317 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	4	3.910