Protein Alignment Rdl and gabrb2

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_001096421.1
• Gene: gabrb2 / 100125027
• XenbaseID: XB-GENE-5791411
• Length: 474
• Species: Xenopus tropicalis
• Alignment Length: 548
• Identity: 173/548 - (31%)
• Similarity: 270/548 - (49%)
• Gaps: 122/548 - (22%)

  Fly    59 ISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRK 123
            :...:|.....||.|:||::||.||.||:.:.:.||..:|||.||:||..||:|.|.|.||:|..
 Frog    36 VKETVDRLLKGYDIRLRPDFGGDPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYSV 100

  Fly   124 RPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMN 188
            .|  ..|::.:.....:|||||:|:|:|:|:.|..|..|..||:|..|::...:|:|.||:|.|:
 Frog   101 IP--LNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMD 163

  Fly   189 LQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINLTTGN 253
            |:.:|:|.|.|.:||||:|||..||.::||.|.::|.....:|||||.::.:...:..:..:||:
 Frog   164 LRRYPLDEQNCTLEIESYGYTTDDIGFYWRGGNNAVTGVERLELPQFSIIDYNLLSRNVVFSTGS 228

  Fly   254 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTN 318
            |.||:...:..|::||:::|.|:||.||.|:||||||:|.:|:.||||||:||||||||:.:...
 Frog   229 YPRLSLSFKLRRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLR 293

  Fly   319 AALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYM-AKRIQMRKQRFMAIQKIA----EQKKQQ 378
            ..||||.|||:||:||..|||.||.:|||||.|.|: ..|...|::|  |.::.|    ||.:.:
 Frog   294 ETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKR--AAERAAHANNEQMRME 356

  Fly   379 LDGANQQQANPNPN--------ANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHA 435
            |:     :.:|:.|        .|........:|.|.|.      :..:............|...
 Frog   357 LN-----KMDPHENILLSTLEIKNEMAASEAVMGLGDPR------STMLAYDTSSIQYRKAGLPR 410

  Fly   436 HSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGG 500
            ||:|.....:..|..:    |.:::...              :.|::.|
 Frog   411 HSYGRNALERHVVQKK----SRLRRRAS--------------QLKINIP---------------- 441

  Fly   501 RGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITP 565
                                                                .:.|:|.
 Frog   442 ----------------------------------------------------DLTDVNA------ 448

  Fly   566 SDIDKYSRIVFPVCFVCFNLMYWIIYLH 593
              ||::||::|||.|..||::||:.|::
 Frog   449 --IDRWSRMIFPVVFSFFNIVYWLYYVN 474

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	72/182 (40%)
		Neur_chan_memb	274..588	CDD:397193	85/326 (26%)
gabrb2	NP_001096421.1	LIC	13..472	CDD:273305	172/544 (32%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D226476at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010