DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rdl and gabrb3

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001096164.1 Gene:gabrb3 / 100124708 XenbaseID:XB-GENE-6030743 Length:475 Species:Xenopus tropicalis


Alignment Length:584 Identity:183/584 - (31%)
Similarity:278/584 - (47%) Gaps:154/584 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 GGSMLGDVNISAIL----------------------DSFSVSYDKRVRPNYGGPPVEVGVTMYVL 92
            ||.:||.:::..::                      |.....||.|:||::||.||.||:.:.:.
 Frog     6 GGQLLGLISVPILISMVCSTQSVNDPGNMSFVKETVDKLLKGYDIRLRPDFGGSPVAVGMNIDIA 70

  Fly    93 SISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHI 157
            ||..:|||.||:||..||:|:|.|.||||...|  ..|::.:.....:|||||:|:|:|:|:.|.
 Frog    71 SIDMVSEVNMDYTLTMYFQQYWRDKRLAYTGIP--LNLTLDNRVADQLWVPDTYFLNDKKSFVHG 133

  Fly   158 ATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLS 222
            .|..|..||:|..|::...:|:|.||:|.|:|:.:|:|.|.|.:||||:|||..||.::|..|.:
 Frog   134 VTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWLGGDN 198

  Fly   223 SVGMSSEVELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWV 287
            :|.....:|||||.::.|:..:..:...||:|.||:...:..|::||:::|.|:||.||.|:|||
 Frog   199 AVTGVERIELPQFSIMDHKLVSKNVVFATGSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWV 263

  Fly   288 SFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVG 352
            |||:|.:|:.||||||:||||||||:.:.....||||.|||:||:||..|||.||.:|||||.|.
 Frog   264 SFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVN 328

  Fly   353 YM--AKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGV 415
            |:  .:..||:|       |:||:..:.                                     
 Frog   329 YIFFGRGPQMQK-------KLAEKSAKS------------------------------------- 349

  Fly   416 NVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFK 480
                    ..:|.....:...:||:.......:.|...|                    .|:...
 Frog   350 --------NKDHSKFESNRVDAHGNILLTTLEIHNEVTG--------------------NEITTS 386

  Fly   481 VHDPK-----------AHSKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGPPEGG 534
            |.|.:           .:.|..|..::: |.|...::|                      ||:  
 Frog   387 VSDARNSATSFDNSGIQYRKQSTARDSL-GRRTADRNH----------------------PPK-- 426

  Fly   535 GDPEAAVPAHLLHPGKVKKVK-----DINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLH 593
                   ..||.......|:|     |:|.        ||::||||||:.|..|||:||:.|::
 Frog   427 -------KTHLRRRSSQLKIKIPDLTDVNA--------IDRWSRIVFPITFSLFNLIYWLYYIN 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 73/182 (40%)
Neur_chan_memb 274..588 CDD:397193 90/331 (27%)
gabrb3NP_001096164.1 LIC 11..473 CDD:273305 179/575 (31%)
Neur_chan_LBD 41..243 CDD:280998 83/203 (41%)
Neur_chan_memb 250..470 CDD:280999 90/331 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D226476at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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