DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and LOC100001259

DIOPT Version :9

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_021336767.1 Gene:LOC100001259 / 100001259 -ID:- Length:369 Species:Danio rerio


Alignment Length:323 Identity:121/323 - (37%)
Similarity:183/323 - (56%) Gaps:7/323 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 HKRIHTVQAATGGGSMLGDVNI-SAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVK 101
            |.|..:..|.|  .:...::.: :.|||.....||.|:||..|.....|...:||.|...:|:..
Zfish    19 HTRSVSADATT--DAFKNNITLFTRILDRLLDGYDNRLRPGLGDRVTTVKTDIYVTSFGPVSDTD 81

  Fly   102 MDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIR 166
            |::|:|.:|||.|.|.||.:.....:  |.:.:.....||.|||||.|.|:|..|..|..|:.:|
Zfish    82 MEYTIDVFFRQSWKDERLKFEGPMNI--LRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLR 144

  Fly   167 VHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFW-RDGLSSVGMSSE- 229
            :...|::..::|||:.|.|||:|:.||||...|.::..|:.||..::.|.| ::..:||.:..| 
Zfish   145 IQDDGTLLYTMRLTVHAECPMHLEDFPMDFHSCPLKFGSYAYTTTEVTYTWTKNASNSVVVEEES 209

  Fly   230 VELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRN 294
            ..|.|:.:||.......|..:||.|:.:.......|.:||::||.|:|..:.||:|.|||||||.
Zfish   210 SRLNQYDLLGQTVGNETIRSSTGEYTVMTAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRE 274

  Fly   295 ATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKR 357
            :.|||...|||||||||||..|...:|||::|..::|.::..|:..||::|:|:|||.|..||
Zfish   275 SVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKR 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 60/184 (33%)
Neur_chan_memb 274..588 CDD:397193 43/84 (51%)
LOC100001259XP_021336767.1 Neur_chan_LBD 7..>350 CDD:332142 121/323 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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