DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nwk and Srgap3

DIOPT Version :9

Sequence 1:NP_001286994.1 Gene:nwk / 39052 FlyBaseID:FBgn0263456 Length:1075 Species:Drosophila melanogaster
Sequence 2:XP_038964130.1 Gene:Srgap3 / 500287 RGDID:1563152 Length:1104 Species:Rattus norvegicus


Alignment Length:1214 Identity:233/1214 - (19%)
Similarity:409/1214 - (33%) Gaps:394/1214 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 VKFLKNLHTEQVAKLQLKNQHECDLLEDIRQFTIKRSAVEKSYSESLLKISSQYLNKKIPNIPDI 75
            :|.::....||...|:.:::....||:|:::|..:::.:|..||.||.|::.:: :.||.:..:.
  Rat    21 IKEIRTQLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKLAERF-SSKIRSSREH 84

  Fly    76 KMEGMEERWNMWSVWRTVLEENEKLARARLAAIEVFQ-------QQIADEAKVLRDYKLA--IAK 131
            :.:..:...:..:.|..||.:..:.:|......::|.       .||:::  |:|.:|.:  |..
  Rat    85 QFKKDQYLLSPVNCWYLVLHQTRRESRDHATLNDIFMNNVIVRLSQISED--VIRLFKKSKEIGL 147

  Fly   132 RSLAGIVNVQKELHLSVGDVDKTKKSYFDEEHCAHDVRDKARDIEEKLKKKKGSFFQSITSLQKN 196
            :....::.|..||:    .|.||...|..|...|.....:|...|||...|.|....::...:..
  Rat   148 QMHEELLKVTNELY----TVMKTYHMYHAESISAESKLKEAEKQEEKQFNKSGDLSMNLLRHEDR 208

  Fly   197 SARVTSRK--ELLEEKSSG-----------ARNDYVLSLAAANAHQNRYFTVDLQ---------- 238
            ..|.:|.|  |.::||...           |||||:|:|||.||..::|:..|:.          
  Rat   209 PQRRSSVKKIEKMKEKRQAKYSENKLKCTKARNDYLLNLAATNAAISKYYIHDVSDLIDCCDLGF 273

  Fly   239 --TTMTTMENYVFERVAEYLMLMGRTELLTCSATQNSFGKIRDQAQQLTREYNLQCCYLFYPVLK 301
              :...|...|:   .|||.:...|.|.|  ...:|:...:..::.:.|  ....|..:|.|.||
  Rat   274 HASLARTFRTYL---SAEYNLETSRHEGL--DIIENAVDNLDSRSDKHT--VMDMCSQVFCPPLK 331

  Fly   302 QHIQYDFEACDNDPVRKVTA------------------------EHESAAETLTKEAKNLAGRVV 342
                ::|:....|.|.:|:|                        |:|...:||....:.|...:.
  Rat   332 ----FEFQPHMGDEVCQVSAQQPVQTELLMRYHQLQSRLATLKIENEEVRKTLDATMQTLQDMLT 392

  Fly   343 KENASIRENAKKLALCQSLRDSGQRTDPND------------------------PNGPDLDTKIE 383
            .|:..:.:..:.....:|::.:...|..:.                        .||.:|.||::
  Rat   393 VEDFDVSDAFQHSRSTESIKSAASETYMSKINIAKRRANQQETEMFYFTKFKEYVNGSNLITKLQ 457

  Fly   384 EFRDQIRRSETEKTKAEACLQCLRDGGINVDE--WV------------------------QEA-- 420
            ...|.::::..|..:||......|||.:.:..  |:                        |::  
  Rat   458 AKHDLLKQTLGEGERAECGTTSRRDGRLRLPHFPWLSCPPAPHFVPHPAFQGRRNARTRNQDSGQ 522

  Fly   421 ------------------ENMGVQELTRSASSISMRTDASGQGENPSSDSFYDSD---------- 457
                              :..|:..:..|...::...::..:||:|..|...:.|          
  Rat   523 AIPLVVESCIRFINLYGLQQQGIFRVPGSQVEVNDIKNSFERGEDPLVDDQNERDINSVAGVLKL 587

  Fly   458 -----------KEETQ----------AAAQTKPKQEQQLSRDRT--------------FSDSEDE 487
                       ||..|          .|.:..|.|:..::..|.              .|...||
  Rat   588 YFRGLENPLFPKERFQDLISTIKLENPADRVHPIQQILITLPRVVIVVMRYLFAFLNHLSQYSDE 652

  Fly   488 PEVRPSAAAASSAAAASSSMMASSAGGWDDPTEVNWGAGEEEDDK-----DEPIVPEPKE----A 543
            ..:.|    .:.|.....::|....|  .||  |:..|...|..|     .|.|.|.|:|    .
  Rat   653 NMMDP----YNLAICFGPTLMHIPDG--QDP--VSCQAHVNEVIKTIIIHHEAIFPSPRELEGPV 709

  Fly   544 IFKCTALYSYTAQNPDELTIVENEQLEVVGEGDGDGWLRARNYRGEEGYVPHNYLDIDQETAGSA 608
            ..||.|                                     .|||      |.|......|  
  Rat   710 YEKCMA-------------------------------------GGEE------YCDSPHSEPG-- 729

  Fly   609 FNGTSGNQLRSQISFSSVDYTVDNEDQTVDSMQSPDQVSVIMAPQKRVKSDVEWCIALYDYDATA 673
                         :...||:....|..|.|     ::|..|.|            ||.:||...:
  Rat   730 -------------TIDEVDHDNGTEPHTSD-----EEVEQIEA------------IAKFDYVGRS 764

  Fly   674 EDELTFEEGDKIKIITKTAHGVDDGWWEGELDGKFGNFPS--LVVEECDE-MGEPLSEGGDESPP 735
            ..||:|::|..:.:.    |...:.||||..:|..|..|.  :||::.|: ..:.||:..|..  
  Rat   765 PRELSFKKGASLLLY----HRASEDWWEGRHNGVDGLIPHQYIVVQDMDDAFSDSLSQKADSE-- 823

  Fly   736 PTAAPTFALPPAPALPPEYAHELELELTEDMFGSQDTADEDSGYI-------PNGAAAPSIPPPV 793
                    ....|.|..:.:.:.:|:..     ::..:|...|.:       .:|||.|.     
  Rat   824 --------ASSGPLLDDKASSKNDLQSP-----TEHISDYGFGGVMGRVRLRSDGAAIPR----- 870

  Fly   794 LIQEPGMEDDLSDDGQPP----PSLPPPQLAKAGGSAPG----SGSKVE-----KGAAAGGANTL 845
              :..|     .|...||    ||:..|..|.|..|:|.    |..::|     :.|..|.|.::
  Rat   871 --RRSG-----GDTHSPPRGLGPSIDTPPRAAACPSSPHKIPLSRGRIESPEKRRMATFGSAGSI 928

  Fly   846 NL--------GMAQIIVTAATPMVEDGADKSFPPVGESDAQPVEPVSK---------EQPAEVAK 893
            |.        |::......:|.....|..||..  .|:.|:.:|....         |:...|.:
  Rat   929 NYPDKKALTEGLSMRSTCGSTRHSSLGDHKSLE--AEALAEDIEKTMSTALHELRELERQNTVKQ 991

  Fly   894 KPDIA----------PKPLAKVAPQSAPAKEGNAGVRPVVSITLTEYPSCDAEDQQSFSEGTD-- 946
            .||:.          |.|::     |.||.       |:.:|.:.: |  ||..::|.|..|:  
  Rat   992 APDVVLDTLEPLKNPPGPIS-----SEPAS-------PLHTIVIRD-P--DAAMRRSSSSSTEMM 1041

  Fly   947 -------SASVADV----PVLQDAEDPFNEKAKGESGDGSGFEA 979
                   ||.:|..    |.::........::...|..|.|..|
  Rat  1042 TTFKPALSARLAGAQLRPPPMRPVRPVVQHRSSSSSSSGVGSPA 1085

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nwkNP_001286994.1 BAR 16..281 CDD:353336 69/298 (23%)
SH3_FCHSD_1 545..600 CDD:212695 7/54 (13%)
SH3 663..718 CDD:354299 18/56 (32%)
PRK12323 <725..956 CDD:237057 58/290 (20%)
Srgap3XP_038964130.1 F-BAR_srGAP3 26..278 CDD:153368 60/258 (23%)
RhoGAP_srGAP 510..694 CDD:239848 28/191 (15%)
SH3_srGAP1-3 753..805 CDD:212888 17/67 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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