DRSC/TRiP Functional Genomics Resources

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Protein Alignment nwk and Cip4

DIOPT Version :9

Sequence 1:NP_001286994.1 Gene:nwk / 39052 FlyBaseID:FBgn0263456 Length:1075 Species:Drosophila melanogaster
Sequence 2:NP_001097501.1 Gene:Cip4 / 38534 FlyBaseID:FBgn0035533 Length:665 Species:Drosophila melanogaster


Alignment Length:665 Identity:152/665 - (22%)
Similarity:251/665 - (37%) Gaps:160/665 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 EQVAKLQLKNQHECDLLEDIRQFTIKRSAVEKSYSESLLKISSQYLNKKIPNIPDIKMEGMEERW 84
            :|...|.:......|.|:....|...|.|:|..|:..|.::...|..|        |.|..:..:
  Fly    73 DQNENLAIHTNRGIDALDKFANFLRDRVAIETEYAGKLRRLVKNYQPK--------KKEEEDNEF 129

  Fly    85 NMWSVWRTVLEENEKLARARLAAIEVFQQQIADE----AKVLRDYKLAIAKRSLAGIVNVQKELH 145
            .....:|.:|:|...||..|....|..|.||...    :|.||:.:    |:.|:....:|:.|.
  Fly   130 TSVQAFRNLLKEVGDLAGQREVVSESLQLQIIAGVTLLSKTLREER----KKCLSDGATLQQNLT 190

  Fly   146 LSVGDVDKTKKSYFDEEHCAHDVRDKA-RDIEEKLKKKKGSFFQSITSLQKNSARVTSRKELLEE 209
            ..:..:|:.|::|           :|| ||.|    |...|:.::...|..:.|.|...|.::..
  Fly   191 TQLSSLDRAKRNY-----------EKAYRDSE----KAVDSYKRADMDLNLSRAEVERYKNVMTS 240

  Fly   210 K---SSGARNDYVLSLAAANAHQNRYFTVDLQTTMTTMENYVFERVAEYLMLMGRTELLTCSATQ 271
            |   |..|:|:|...|...|..|.:::::.|.:.:..::....:|...:     |..::..:..:
  Fly   241 KIQQSDDAKNEYANQLQKTNNLQQQHYSMLLPSVLNRLQELDEKRTRGF-----REFIVGAADVE 300

  Fly   272 NSFGKI-----------------RDQAQQLTREYNLQCCYLFYPVLKQHIQY-DFEACDNDPVR- 317
            :|...|                 ::...::...|...    |.|  .:.|.: |...||.|.|: 
  Fly   301 SSVAPIIARCMEGIVKAGESINEKEDTFKVIERYQSG----FTP--PRDIPFEDLSKCDPDSVQD 359

  Fly   318 ----KVTAEHESAAETLTKEAKNLAGRVVKENASIRENAKKLALCQSLRDSGQRTDPND--PN-- 374
                ..|:.|.:...|::  |..|..||...|..   .:.|    .||...||:.|.:|  ||  
  Fly   360 SHYSNSTSNHLTIRGTMS--ANKLKKRVGIFNIF---GSNK----NSLTADGQKEDFSDLPPNQR 415

  Fly   375 GPDLDTKIEEFRDQIRRSETEKTKAEACLQCLR---------------DGGINVDEWVQEAENMG 424
            ...|..||.|....|    .::|||...|..::               :|.:|..|  .:.|.:.
  Fly   416 RKKLQAKIAELTQNI----AQETKARDGLMKMKIVYEANSSLGNPMTVEGQLNESE--HKLEKLK 474

  Fly   425 V-----QELTRSASSISMRTDA-------------SGQGENPSSDSFYDSDKEETQAAAQTKPKQ 471
            |     |.....||.:...|.:             :.:..|.|:|..:|...::        |..
  Fly   475 VDLKKYQGFLEKASQVPTATSSPQASRNQLQNGHRTSRHSNGSADDHHDDGDDQ--------PDD 531

  Fly   472 EQQLSRDRTFSDSEDE-PEVR--------PSAAAASSAAAASSSMMASSAGGWDDPTEVNWGAGE 527
            ...|||    |||||. .:::        .||:..|....:.:|:..|..|          .|.|
  Fly   532 AGSLSR----SDSEDNVAQIQNGHNNNNNGSASPESGLGTSHTSLPGSGQG----------SANE 582

  Fly   528 E---EDDKDEPIVPEPKEAIFKCTALYSYTAQNPDELTIVENEQLEVVGEGDGDGWLRAR---NY 586
            .   ||...|..| |....:.||.|||.:.|.:...:.:.|.|:|:|:....||||.|.|   |.
  Fly   583 NAIGEDTYYETEV-ETLNPVGKCRALYPFEASSEGSIPMSEGEELQVIEIDQGDGWTRVRRENNS 646

  Fly   587 RG-EEGYVPHNYLDI 600
            .| :||:||.:|::|
  Fly   647 NGWDEGFVPTSYIEI 661

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nwkNP_001286994.1 BAR 16..281 CDD:353336 58/285 (20%)
SH3_FCHSD_1 545..600 CDD:212695 23/58 (40%)
SH3 663..718 CDD:354299
PRK12323 <725..956 CDD:237057
Cip4NP_001097501.1 F-BAR_CIP4-like 69..319 CDD:153337 58/277 (21%)
HR1_CIP4-like 412..488 CDD:212009 17/81 (21%)
SH3_CIP4-like 603..661 CDD:212844 23/57 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3565
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D348563at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR15735
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.920

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